Table 3.
Gene annotations of the 62 anaerobic core families.
| Cluster | Annotation | Comments |
|---|---|---|
| 6079 | radical_SAM_protein | SAM methyltransferase |
| 9248 | radical_SAM_protein | Pyruvate formate lyase activating enzyme EC:1.97.1.4; SAM methyltransferase |
| 21,920 | Radical_SAM_domain_protein | rlmN; 23S rRNA methyltransferase [EC:2.1.1.192]; SAM |
| 10,466 | type_11_methyltransferase | SAM methyltransferase |
| 21,520 | type_11_methyltransferase | SAM methyltransferase |
| 14,283 | Methylase_involved_in… | SAM methyltransferase |
| 1662 | 50S_ribosomal_protein_L29 | RP-L29, rpmC; large subunit ribosomal protein L29 |
| 1296 | acetyl-CoA_decarbonylase/synthase… | Acetyl-CoA decarbonylase/synthase complex subunit gamma [EC:2.1.1.245] |
| 1321 | acetyl-CoA_decarbonylase/synthase… | Acetyl-CoA decarbonylase/synthase complex subunit delta [EC:2.1.1.245] |
| 7851 | ATP_synthase_subunit_c | ATPVK, ntpK, atpK; V/A-type H +-transporting ATPase subunit K |
| 4404 | ferredoxin | fer; ferredoxin |
| 18,705 | flavodoxin | Flavodoxin |
| 13,779 | heterodisulfide_reductase_subunit_A… | Heterodisulfide-reductase CoB CoM |
| 14,009 | heterodisulfide_reductase_subunit_C… | Heterodisulfide reductase; CoM CoS |
| 4789 | membrane_bound_hydrogenase_subunit… | Multicomponent Na +:H + antiporter |
| 11,625 | Membrane-bound_hydrogenase_MBH… | Membrane-bound-hydrogenase antiporter subunit |
| 11,548 | L-glutamine_synthetase | glnA, GLUL; glutamine synthetase [EC:6.3.1.2]; glutamine-synthetase |
| 10,709 | nitrogenase_iron-iron_accessory_protein… | Iron–iron nitrogenase accessory protein AnfO |
| 5364 | acetyltransferase | CoA acyl-CoA acetyltransferase |
| 10,044 | phenylacetate–CoA_ligase | paaK; phenylacetate-CoA ligase [EC:6.2.1.30]; CoA phenylacetate-CoA-ligase |
| 23,640 | NADPH-dependent_FMN_reductase | FMN FAD NADH NADH-dependent-FMN-reductase |
| 10,494 | NADPH-dependent_FMN_reductase | NADH-dependent-FMN-reductase |
| 4774 | sugar_kinase | Sugar-kinase |
| 11,273 | FeoA_family_protein | feoA ferrous iron transport protein A |
| 11,762 | aldo/keto_reductase | K07079; NADH aldo/keto-reductase |
| 12,136 | putative_ABC_transporter | Putative ABC transport system permease protein |
| 6304 | citrate_transporter | Citrate_transporter |
| 16,010 | cobalamin_biosynthesis_protein | cbiN; cobalt/nickel transport protein; cobalamin |
| 14,243 | cytochrome_c_biogenesis… | Cytochrome c-biogenesis transmembrane protein |
| 1071 | ApbE_family_lipoprotein | K09740; hypothetical protein; ApbE_family_lipoprotein |
| 6375 | beta-lactamase_domain-containing_protein | Beta-lactamase metal dependent |
| 4311 | deblocking_aminopeptidase | E3.2.1.4; endoglucanase metal metallopeptidase |
| 22,518 | YcfA-like_protein | hicA; mRNA interferase HicA [EC:3.1.-.-]; YcfA-like-protein |
| 15,732 | nucleotidyltransferase | K07076; nucleotidyltransferase |
| 4155 | PP-loop_domain-containing… | ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA; PP-loop |
| 9988 | regulatory_protein_MarR | Regulatory-protein-MarR transcriptional-regulator |
| 23,018 | type_II_site-specific_deoxyribonuclease | Type-II-restriction-enzyme type-II-site-specific-deoxyribonuclease |
| 16,528 | transposase,_IS4 | Transposase |
| 10,489 | ATP-dependent_RNA_helicase | CRISPR-associated-endonuclease/helicase Cas3; ATP-dependent |
| 15,539 | CRISPR-associated_protein… | CRISPR-associated protein Cmr3 |
| 14,799 | CRISPR-associated_protein… | CRISPR-associated protein Csm1 |
| 18,976 | helicase_domain_protein | Helicase |
| 20,220 | helicase-like_protein | Helicase |
| 2237 | xylose_isomerase_domain… | Metal-dependent; xylose-isomerase-domain-containing-protein |
| 20,694 | xylose_isomerase_domain… | Metal xylose-isomerase-domain-containing-protein |
| 7805 | putative_YgiT-type_zinc_finger | Zinc zinc-finger domain |
16 other protein families annotated as hypothetical proteins.