Table 2.
Details of CCHF virus strains originated from Iran and other countries retrieved from GenBank and used for sequence analysis
| Virus strains | Location | Date | Clade/Name (S segment) | GenBank accession no S segment | Clade/Name (M segment) | GenBank accession no M segment |
|---|---|---|---|---|---|---|
| NIV 112143 | India | 2011 | IV/ASI-1 | JN572089 | - | - |
| SCT ex Afghanistan | Afghanistan | 2012 | IV/ASI-1 | JX908640 | - | - |
| Afg09-2990 | Afghanistan | 2009 | IV/ASI-1 | HM452305 | - | - |
| ArTec193-3 | Iran | 1978 | I/WAFR-1 | U15022 | - | - |
| 766/02 | Iran | 2004 | IV/ASI-1 | AY366373 | - | - |
| 787/02 | Iran | 2004 | IV/ASI-1 | AY366379 | - | - |
| Iran 52 | Iran | 2002 | - | - | III/S AFR,WAFR-2 | DQ446215 |
| Iran53 | Iran | 2002 | - | - | III/S AFR,WAFR-2 | DQ446216 |
| Baghadad12 | Iraq | 1979 | IV/ASI-1 | AJ538196 | III/S AFR,WAFR-2 | AJ538197 |
| China79121 | China | 1979 | IV/ASI-2 | AF358784 | I/W AFR-1 | AB069673 |
| ChinaC68031 | China | 1968 | - | - | IV/ASI | DQ211629 |
| Kosovo 1917 | Kosovo | 2009 | V/EUR | JN173797 | - | - |
| Kososvo9553 | Kosovo | 2001 | - | - | V/EUR | AY675511 |
| KosovoHoti | Kosovo | 2001 | - | - | V/EUR | EU037902 |
| ArMg951 | Madagaskar | 1994 | IV/ASI-1 | U15024 | - | - |
| IbAr10200 | Nigeria | 1966 | III/S AFR,W AFR-2 | U88410 | III/S AFR,W AFR-2 | AF467768 |
| Matin | Pakistan | 1976 | IV/ASI-1 | AF527810 | 4/ASI | AF467769 |
| PakistanSR3 | Pakistan | 2000 | IV/ASI-1 | AJ538198 | III/S AFR,W AFR-2 | AJ538199 |
| Drosdov | Russia | 1967 | V/EUR | DQ211643 | V/EUR | DQ211630 |
| Kashmanov | Russia | 1967 | V/EUR | DQ211644 | V/EUR | DQ211631 |
| SPU 128817 | South Africa | 1981 | III/S AFR,W AFR-2 | DQ076415 | III/S AFR,W AFR-2 | DQ157174 |
| SPU9785 | South Africa | 1985 | III/S AFR,W AFR-2 | DQ211646 | IV/ASI | DQ211633 |
| ArD39554 | Mauritania | 1984 | III/S AFR,W AFR-2 | DQ211641 | VII/MAURITANIA | DQ211628 |
| AB1-2009 | Sudan | 2009 | - | - | III/S AFR,W AFR-2 | HQ378187 |
| ArD8194 | Senegal | 1969 | I/W AFR-1 | DQ211639 | I/W AFR-1 | DQ211626 |
| ArD15786 | Senegal | 1972 | I/W AFR-1 | DQ211640 | - | - |
| Semunya | Uganda | 1958 | II/CENTRAL AFR | DQ076413 | ||
| UG3010 | Congo | 1956 | II/CENTRAL AFR | DQ211650 | I/W AFR-1 | DQ211637 |
| Hodzha | Uzbekistan | 1967 | IV/ASI-2 | AY223475 | III/S AFR,W AFR-2 | AY223476 |
| HU8966 | Tajikistan | 1990 | - | - | III/S AFR,WAFR-2 | AY179962 |
| AP92 | Greece | 1975 | VI/GREECE | DQ211638 | VI/GREECE | DQ211625 |
| Oman | Oman | 1997 | IV/ASI-1 | DQ211645 | IV/ASI | DQ211632 |
| Dubai 616 | Dubai | 1979 | IV/ASI-2 | JN108025 | - | - |
| Kelkit06 | Turkey | 2006 | V/EUR | GQ337053 | - | - |
| 200310849 | Turkey | 2003 | V/EUR | DQ211649 | V/EUR | DQ211636 |
| KT281/75 | - | - | Dugbe virus | AF434165 | - | - |
| JC280 | Pakistan | 1992 | Hazara virus | M86624 | - | - |