Skip to main content
. 2016 Jun 13;13:98. doi: 10.1186/s12985-016-0554-y

Table 4.

Pairwise comparison of amino acid sequence of p13 protein of selected PRV strains showing Genotypes I (sub-genotypes Ia and Ib) and II1

Genotype Ia Ib II
PRV isolate 2 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 Ia
KT456503 -
KU131593 a 99.2 -
KU131594 a 100 99.2 -
KC473454 100 99.2 100 -
KU131591 a 98.4 97.6 98.4 96.8 -
KR872636 98.4 97.6 98.4 96.8 96.8 -
KT456500b 100 99.2 100 98.4 98.4 98.4 -
JN991006 98.4 97.6 98.4 96.8 98.4 98.4 98.4 -
HG329868 99.2 98.4 99.2 97.6 99.2 99.2 99.2 99.2 -
KU160514 97.6 96.8 97.6 96.0 99.2 99.2 97.6 97.6 98.4 -
KT456501 96.8 96.0 96.8 95.2 98.4 98.4 96.8 96.8 97.6 97.6 -
KC473453 97.6 96.8 97.6 96.0 99.2 99.2 97.6 97.6 98.4 100 97.6 -
KT456505 97.6 96.8 97.6 96.0 97.6 97.6 97.6 97.6 98.4 96.8 96.0 96.8 -
KU160513 96.8 96.0 96.8 95.2 98.4 98.4 96.8 96.8 97.6 99.2 96.8 99.2 96.0 -
HG329848 99.2 98.4 99.2 97.6 99.2 99.2 99.2 99.2 100 98.4 97.6 98.4 98.4 97.6 -
KU131597 92.7 91.9 92.7 91.9 92.7 92.7 92.7 93.5 93.5 91.9 91.1 91.9 91.9 91.1 93.5 - Ib
HG329897c 92.7 91.9 92.7 91.9 92.7 92.7 92.7 93.5 93.5 91.9 91.1 91.9 91.9 91.1 93.5 100 -
KU131602 92.7 91.9 92.7 91.9 92.7 92.7 92.7 93.5 93.5 91.9 91.1 91.9 91.9 91.1 93.5 100 100 -
KC795571 92.7 91.9 92.7 91.9 92.7 92.7 92.7 93.5 93.5 91.9 91.1 91.9 91.9 91.1 93.5 100 100 100 -
KU131604 a 92.7 91.9 92.7 91.9 92.7 92.7 92.7 93.5 93.5 91.9 91.1 91.9 91.9 91.1 93.5 100 100 100 100 -
GU994022 92.7 91.9 92.7 91.9 92.7 92.7 92.7 93.5 93.5 91.9 91.1 91.9 91.9 91.1 93.5 100 100 100 100 100 -
KU131603 92.7 91.9 92.7 91.9 92.7 92.7 92.7 93.5 93.5 91.9 91.1 91.9 91.9 91.1 93.5 100 100 100 100 100 100 -
KU131598 a 91.9 91.1 91.9 91.9 91.1 91.9 91.9 92.7 92.7 91.1 90.3 91.1 91.1 90.3 92.7 99.2 99.2 99.2 99.2 99.2 99.2 99.2 -
KU131595 a 79.8 80.6 79.8 80.6 79.8 79.8 79.8 79.8 80.6 79.0 78.2 79.0 79.8 78.2 80.6 78.2 78.2 78.2 78.2 78.2 78.2 78.2 77.4 - II
KU131596 a 79.8 80.6 79.8 79.8 80.6 79.8 79.8 79.8 80.6 79.0 78.2 79.0 79.8 78.2 80.6 78.2 78.2 78.2 78.2 78.2 78.2 78.2 77.4 100 -
LN680851d 79.8 80.6 79.8 79.8 80.6 79.8 79.8 79.8 80.6 79.0 78.2 79.0 80.6 78.2 78.2 78.2 78.2 78.2 78.2 78.2 78.2 78.2 77.4 97.6 97.6 -

1Pairwise sequence comparision was done with EMBOSS Water on-line program [52]. Bold text denotes new Chilean PRV sequences generated in this study

2PRV isolates identified in vertical column by GenBank Accession Numbers and on the top horizontal by order of listing in vertical column

aDenotes PRV “isolates” from coho salmon; bDenotes PRV “isolate” from Chinook salmon; cDenotes PRV “isolate” from sea trout. dDenotes PRV “isolate” from rainbow trout