Table 2.
List of the species used in this study
| Species; scientific name (abbreviation in trees) | Assembly |
|---|---|
| Acorn worm; Saccoglossus kowalevskii (Sko)a | Skow_1.1 |
| Fruitfly; Drosophila melanogaster (Dme) | BDGP5 |
| Lancelet; Branchiostoma floridae (Bfl)a | v2.0 |
| Lancelet (transcriptome); Branchiostoma lanceolatum (Bla)a | PRJNA82409 |
| Pelagic tunicate; Oikopleura dioica (Odi)a | ASM20953v1 |
| Purple sea urchin; Strongylocentrotus purpuratus (Spu)a | Spu_3.1 |
| Vase tunicate; Ciona intestinalis (Cin)a | JGI2/KH |
| Arctic lamprey; Lethenteron camtschaticum (Lca) | LetJap1.0 |
| Sea lamprey; Petromyzon marinus (Pma) | Pmarinus_7.0 |
| Elephant shark; Callorhinchus milii (Cmi) | Callorhinchus_milii-6.1.3 |
| Spotted gar; Lepisosteus oculatus (Loc) | LepOcu1 |
| Coelacanth; Latimeria chalumnae (Lch) | LatCha1 |
| Atlantic cod; Gadus morhua (Gmo) | gadMor1 |
| Green spotted pufferfish; Tetraodon nigroviridis (Tni) | TETRAODON 8.0 |
| Fugu; Takifugu rubripes (Tru) | FUGU 4.0 |
| Medaka; Oryzias latipes (Ola) | HdrR |
| Mexican cave tetra; Astyanax mexicanus (Ame) | AstMex102 |
| Nile tilapia; Oreochromis niloticus (Oni) | Orenil1.0 |
| Three-spined stickleback; Gasterosteus aculeatus (Gac) | BROAD S1 |
| Zebrafish; Danio rerio (Dre) | Zv9 |
| Western clawed frog; Xenopus tropicalis (Xtr) | JGI_4.2 |
| Grey short tailed opossum; Monodelphis domestica (Mdo) | monDom5 |
| Human; Homo sapiens (Hsa) | GRCh37 |
| Mouse; Mus musculus (Mmu) | NCBI m37/GRCm38 |
| American alligator; Alligator mississippiensis (Ami)b | allMis0.2 |
| Brumese python; Python molurus bivittatus (Pmo)b | Python_molurus_bivittatus-5.0.2 |
| Chinese alligator; Alligator sinensis (Asi)b | ASM45574v1 |
| Chinese softshell turtle; Pelodiscus sinensis (Psi)b | PelSin_1.0 |
| Green anole lizard; Anolis carolinensis (Aca) | AnoCar2.0 |
| Green sea turtle; Chelonia mydas (Cmy)b | CheMyd_1.0 |
| Painted turtle; Chrysemys picta bellii (Cpi)b | ChrPicBel3.0.1 |
| Chicken; Gallus gallus (Gga) | WASHUC2 |
| Collared flycatcher; Ficedula albicollis (Fal) 2 | FicAlb_1.4 |
| Mallard; Anas platyrhynchos (Apl)b | BGI_duck_1.0 |
| Ostrich; Struthio camelus australis (Sca)b | ASM69896v1 |
| Zebra finch; Taeniopygia guttata (Tgu)b | taeGut3.2.4 |
a) Included invertebrate species for nhmmer searches for PDE6 inhibitory subunit genes
b) Additional bird and non-avian reptiles included in the searches for PDE6A (Additional file 3: Figure S1)
List and details of the species used in this study. The current table shows 5 the common name, scientific name abbreviation and source for all species used to 6 perform the phylogenetic and analyses of conserved synteny