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. 2016 Jun 13;16:124. doi: 10.1186/s12862-016-0695-z

Table 3.

List of the primer pairs used for qRT-PCR experiments and to synthesise riboprobes

qRT-PCR primers
Gene Forward primer 5′–3′ Reverse Primer 5′–3′ Product length
pde6a CAGTCAACAAGATCGGGGCT GCTCAGGTGAAACACTCGGA 104 bp
pde6b ACTCACGACAGGCAAACTGA CATGCAGCTTGGCTAGAGGA 146 bp
pde6c ACTCCTGATGGCAGGGAGAT AGCAACATAGGTGGGCAGTC 135 bp
pde6ga CACAAGGGCCCACCTAAGTT AACTCCAGGTGACTGTACGC 164 bp
pde6gb GTTCAAGAGCAAGCCCCCAA GTGCCTAAACCTTCCATGCC 75 bp
pde6ha CTTCGGAGACGACATCCCAG ATCGCTGAGCTCCATGTCTC 94 bp
pde6hb CCTGGACAGAAAGGGTTTGGT CTGAGCTCCATGTCCCCGAA 104 bp
pde6i ACAACTACACCCAGAAGCGG TGCCAAGACCATCCATTCCT 127 bp
actb1 GGCACGAGAGATCTTCACTCCCC CCATGCCAACCATCACTCCCTGA 195 bp
tuba1b CGGAGCTGGAAAACACGTCCCC TGGTCAGACAGTTTGCGAACCCTA 216 bp
Probe primers
pde6ga TCCACCAGCAACATCCTGCACC CGCGCTATGGCAGACGCTGA 679 bp
pde6gb TCTGCCATGTCCTCCATCGGC AGACGAGGCACCGAGGCACA 381 bp
pde6ha GGCGCTCTCAGGCCAACACA AGGCACAAACACAATCTCATGCACA 205 bp
pde6hb TGGCCAAATACGGCATCATCT CATCCATCGTGGCTGCTACA 280 bp

The current table specifies the primer pair sequences used to amplify gene sequences either to perform qRT-PCR or to synthesise the antisense and sense riboprobes used in ISH experiments. Actin beta I (actb1) and tubulin alpha 1b (tuba1b) were used as housekeeping genes in the qRT-PCR experiments