FIG 1.

Regulated transcripts (A) and LC-MS/MS-identified protein (B) in media containing aspen (Asp), microcrystalline cellulose (MCC), and lodgepole pine (LP). RNA-seq results (A) exclude genes with transcripts accumulating <4-fold relative to Glc or with RPKM values of <10. Protein identifications include only those with ≥2 unique peptides. Substantial overlap between substrates was observed. For examples, 146 (128 plus 18) genes were upregulated and 104 (26 plus 78) proteins were identified in both Asp and LP.