TABLE 5.

Putative transporters with transcripts accumulating >4-fold in one or more pairwise comparisons^a

IDb	Putative transporter(s)c	Commentsd	RPKMe				MCC/Glc		Asp/Glc		LP/Glc		LP/Asp
			Glc	MCC	Asp	LP	R	P	R	P	R	P	R	P
131978	Cytosine-purine permease	TMHs	10	18	42	40	1.79	0.02	4.11	0.00	3.93	0.00	0.96	0.93
102298	Quinate permease	TMHs	5	51	815	1278	10.21	0.00	164.87	0.00	258.47	0.00	1.57	0.26
104972	Monosaccharides	TMH, peptides	186	451	1034	875	2.43	0.01	5.56	0.00	4.71	0.00	0.85	0.72
125778	Oligopeptides	TMHs	48	206	727	810	4.31	0.00	15.24	0.00	16.98	0.00	1.11	0.78
109849	ABC		28	30	146	280	1.08	0.79	5.24	0.00	10.06	0.00	1.92	0.07
106642	Amino acid	TMHs	13	21	60	55	1.68	0.18	4.80	0.00	4.38	0.00	0.91	0.82
105323	Amino acid permease		4	10	56	77	2.74	0.03	15.24	0.00	21.16	0.00	1.39	0.69
139405	Ammonium	TMHs, IVS	29	47	136	130	1.62	0.10	4.63	0.00	4.42	0.00	0.96	0.92
25027	High-affinity glucose		7	25	154	277	3.71	0.01	23.25	0.00	41.73	0.00	1.79	0.05
27321	High-affinity glucose	TMHs	48	102	370	341	2.13	0.06	7.74	0.00	7.15	0.00	0.92	0.77
137336	Lactose permease	TMHs	68	136	470	888	2.01	0.15	6.93	0.00	13.09	0.00	1.89	0.02
17021	MFS	TMHs	13	13	61	67	1.01	0.99	4.86	0.00	5.31	0.00	1.09	0.85
21787	MFS	TMHs	281	471	1144	1039	1.68	0.04	4.08	0.00	3.70	0.00	0.91	0.89
26276	MFS		118	252	741	898	2.14	0.04	6.29	0.00	7.63	0.00	1.21	0.65
82841	MFS	TMHs	93	104	451	820	1.11	0.83	4.86	0.01	8.82	0.01	1.82	0.43
89075	MFS	TMHs	6	15	83	125	2.35	0.01	13.08	0.00	19.66	0.00	1.50	0.42
94573	MFS	TMHs	75	248	319	447	3.32	0.00	4.29	0.00	5.99	0.00	1.40	0.58
106117	MFS	TMHs	5	5	22	24	0.98	0.93	4.50	0.00	5.03	0.00	1.12	0.89
106119	MFS	TMHs	15	34	284	465	2.30	0.18	19.13	0.00	31.27	0.00	1.64	0.10
127030	MFS		5	22	259	303	4.17	0.00	49.64	0.00	58.08	0.00	1.17	0.59
133564	MFS	TMHs	4	6	27	20	1.38	0.75	6.64	0.00	4.78	0.00	0.72	0.48
139794	MFS	TMHs	8	12	33	48	1.51	0.39	4.21	0.00	6.13	0.00	1.46	0.22
139522	MFS	TMHs	5	8	56	110	1.52	0.07	10.26	0.00	20.11	0.00	1.96	0.18
123017	Oligopeptide	TMHs	3	11	61	85	3.37	0.02	19.32	0.00	27.06	0.00	1.40	0.58
166774	Siderophore iron transporter		5	4	71	56	0.76	0.29	14.90	0.00	11.75	0.00	0.79	0.66
107257	Sugar MFS		6	21	293	590	3.23	0.00	46.06	0.00	92.67	0.00	2.01	0.17
135536	Sugar MFS	TMHs	27	38	166	377	1.44	0.12	6.21	0.00	14.14	0.00	2.28	0.01
96986	Sulfate permease	TMHs	8	6	50	48	0.82	0.60	6.59	0.00	6.33	0.00	0.96	0.92
133004	Sulfite efflux pump		10	41	102	59	3.97	0.00	9.79	0.00	5.64	0.00	0.58	0.37
29361	Sugar MFS	TMHs	42	42	107	225	1.00	0.99	2.55	0.00	5.55	0.00	2.10	0.02
163632	Sugar MFS	TMHs	12	21	43	115	1.82	0.09	3.71	0.00	9.95	0.00	2.68	0.00
139839	MFS	TMHs	24	40	86	101	1.60	0.40	3.67	0.00	4.29	0.00	1.17	0.80
138483	MFS	TMHs	25	27	80	123	1.10	0.68	3.21	0.00	4.96	0.00	1.54	0.31
100664	MFS	TMHs	4	4	13	17	1.08	0.80	3.57	0.00	4.86	0.00	1.36	0.65
100215	MFS	TMHs	4	6	13	18	1.04	0.84	3.00	0.00	4.18	0.00	1.40	0.37

^aLimited to genes with Asp and LP RPKM values of >10. Expression ratios (R) and moderated t test-derived probability (P) are shown.

^bProtein model identifiers (ID) derived from the Joint Genome Institute's databases (44).

^cClassification based on SwissProt best hits. Abbreviations: MFS, major facilitator superfamily; ABC, ATP-binding cassette superfamily.

^dPredicted transmembrane helices (THHs) and gene models with extended intervening sequences (IVS) indicated. Peptides were detected in Asp and LP filtrates with emPAI values of 0.14 and 0.16, respectively.

^eRNA-seq-normalized reads per kilobase per million (RPKM).