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Benchmarking of hybridSPAdes, PBcR and Cerulean on TM6 dataset
|
TM6 |
|||||
|---|---|---|---|---|---|
| LG50 | NG50 | NG75 | longest | MA | |
| hybridSPAdes | 1 | 1088795 | 1088795 | 1088795 | – |
| Cerulean | 1 | 773677 | 221583 | 773677 | 1 |
| selfPBcR | 7 | 41009 | 18600 | 146018 | 26 |
The initial TM6 assembly by SPAdes had total size exceeding 4 Mb that greatly exceeds the genome length reported in McLean, 2013 (McLean et al., 2013). This is caused by contaminants since TM6 dataset represents a mini-metagenome. See (McLean et al., 2013) for details.
