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TWIN and malignerDP Contig Location Errors. Errors in the placement of the contig by malignerDP and TWIN, as compared to the true placement given by nucmer. TWIN and malignerDP place all 31 contigs correctly, but TWIN reports contig alignment locations with several kb of error that cannot be explained by the sizes of the contig boundary restriction fragments (Color version of this figure is available at Bioinformatics online.)
