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. 2016 Jun 14;11(6):e0157381. doi: 10.1371/journal.pone.0157381

Table 2. Custom-designed baits used for Sureselect target enrichment of 15 CRC susceptibility genes.

Chr Genbank reference Gene Total target region (kb) Chromosome Total area covered (kb) % of total target area % repeated sequences
Start End
1 NM_001128425.1 MUTYH 19,2 45791914 45811142 10,7 56% 33%
2 NM_002354.2 EPCAM 25,9 47591286 47617165 13,4 52% 55%
2 NM_000251.2 MSH2 88,1 47625262 47713360 26,1 30% 58%
2 NM_000179.2 MSH6 31,9 48005220 48037084 14,5 45% 42%
2 NM_000534.4 PMS1 101,5 190643810 190745354 48,4 48% 41%
3 NM_000249.3 MLH1 60,5 37034840 37095335 23,2 38% 52%
5 NM_002439.4 MSH3 230,3 79945293 80175633 80,6 35% 53%
5 NM_000038.5 APC 146,7 112038217 112184935 60,6 41% 47%
7 NM_000535.5 PMS2 36,7 6012370 6049037 9,8 27% 59%
10 NM_004329.2 BMPR1a 176,5 88511395 88687944 52,7 30% 58%
10 NM_000314.4 PTEN 103,3 89628194 89731531 41,8 40% 49%
14 NM_001040108.1 MLH3 43,8 75477466 75521235 21,3 49% 41%
16 NM_003502.3 AXIN1 73 334439 407464 39,1 54% 36%
17 NM_004655.3 AXIN2 118,5 63521684 63640183 65 55% 34%
18 NM_005359.5 SMAD4 62,8 48551582 48614409 31,7 50% 39%

Baits were designed against 15 CRC susceptibility genes. Target region spans the entire genomic region, including 5 kb upstream and 3 kb downstream of the gene. Repeated sequences are not covered by custom-designed baits.