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. 2016 Jun 15;7:810. doi: 10.3389/fmicb.2016.00810

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Copyright © 2016 Bossé, Li, Fernandez Crespo, Chaudhuri, Rogers, Holden, Maskell, Tucker, Wren, Rycroft, Langford and the BRaDP1T Consortium.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Mauve alignments of ICEApl1 and closely related members of the ICEHin1056 subfamily of elements. The orientation and relative size of genes in each ICE are indicated by the small rectangular blocks (lower blocks are on the complementary strand), with those colored green indicating genes of Tn10 elements present in all except ICEHin2866. Note the extra genes in the Tn10 insertion in ICEHin1056 are due to the presence of a further IS5 insertion not seen in the other ICE. Regions containing contiguous genes of related function are indicated by colored blocks above the genes, and are connected by lines to matching blocks in each ICE sequence. The labels at the top and bottom of the figure indicate functional sets of genes defined by Juhas et al. (2007b).