Table 4.
Running time with various numbers of threads (in minutes)
| Methods | 8 threads | 16 threads | 24 threads | 32 threads |
|---|---|---|---|---|
| Human genomes | ||||
| deBWT | 194 | 153 | 142 | 134 |
| deBWT (no conversion) | 109 | 68 | 56 | 48 |
| ParaBWT | 265 | 240 | 240 | 241 |
| Human contigs | ||||
| deBWT | 183 | 154 | 123 | 129 |
| vdeBWT (no conversion) | 116 | 86 | 56 | 56 |
| ParaBWT | 294 | 277 | 276 | 262 |
| Primate genomes | ||||
| deBWT | 423 | 355 | 332 | 330 |
| deBWT (no conversion) | 193 | 125 | 105 | 100 |
| ParaBWT | 196 | 182 | 181 | 180 |
‘DeBWT’ indicates the elapsed time of deBWT, and ‘deBWT (no conversion)’ deducts the time of the format conversion of Jellyfish output file.