Table 2.

Inferred parameters for simulated data (the correct parameter values are shown within parentheses)

Mechanistic ODE model and matrix Z
j	Mechanism	$z_{j1}$	$z_{j2}$	$z_{j3}$	Rate param.
1	Basal activ. of A	1	1	1	0.012 (0.01)
2	Basal activ. of B	1	1	1	0.047 (0.05)
3	A activates B	1	0	0	6.410 (6)
4	B activates B	1	0	1	2.864 (2)
5	B activates C	0	1	0	0.633 (0.5)
6	C activates B	0	1	0	1.343 (1)
7	C activates D	0	0	1	0.096 (0.1)
8	D inhibits C	0	0	1	0.423 (0.5)
9	Degrad. of A	1	1	1	0.169 (0.15)
10	Degrad. of B	1	1	1	3.321 (2.5)
11	Degrad. of C	1	1	1	0.096 (0.05)
12	Degrad. of D	1	1	1	0.047 (0.05)

Latent process
Parameter	Value	Allowed range
λ1	0.950 (1)	[0.25, 3]
τ1	8.387 (8)	[2, 10]
λ2	0.491 (0.5)	[0.25, 3]
τ2	18.057 (18)	[12.5, 30]

In the statistical model, the parameters α and β have the values, 0.0001 and 0.1, respectively.