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. 2016 Jun 15;4:25. doi: 10.3389/fchem.2016.00025

Table 2.

NMR and X-ray crystallography structures of aptamers for small molecules that have been deposited into the Protein Data Bank (PDB).

Target PDB-ID Chemistry Technique Year References
AMP 1AM0 RNA NMR 1996 Jiang et al., 1996
AMP 1RAW RNA NMR 1996 Dieckmann et al., 1996
AMP 1AW4 DNA NMR 1997 Lin et al., 1997
Argininamide 1DB6 DNA NMR 2000 Robertson et al., 2000
Arginine 1KOC RNA NMR 1996 Yang et al., 1996
Arginine 2ARG DNA NMR 1998 Lin et al., 1998
Biotin 1F27 RNA X-ray 2000 Nix et al., 2000
Citrulline 1KOD RNA NMR 1996 Yang et al., 1996
Cyanocobalamin 1DDY RNA X-ray 2000 Sussman et al., 2000
Cyanocobalamin 1ET4 RNA X-ray 2000 Sussman and Wilson, 2000
DFHBI 4Q9Q, 4Q9R, 4KZD, and 4KZE RNA X-ray 2014 Huang et al., 2014
DFHBI 4TS2 and 4TS0 RNA X-ray 2014 Warner et al., 2014
FMN 1FMN RNA NMR 1996 Fan et al., 1996
GTP 2AU4 RNA NMR 2006 Carothers et al., 2006
Malachite Green 1F1T RNA X-ray 2000 Baugh et al., 2000
Malachite Green 1Q8N RNA NMR 2004 Flinders et al., 2004
Neomycin B 1NEM RNA NMR 1999 Jiang et al., 1999
Streptomycin 1NTB and 1NTA RNA X-ray 2003 Tereshko et al., 2003
Tetracycline 3EGZ RNA X-ray 2008 Xiao et al., 2008
Theophylline 1EHT RNA NMR 1997 Zimmermann et al., 1997
Theophylline 1O15 RNA NMR 2003 Clore and Kuszewski, 2003
Tobramycin 1TOB RNA NMR 1997 Jiang et al., 1997
Tobramycin 2TOB RNA NMR 1998 Jiang and Patel, 1998

AMP, adenosine monophosphate.