Table 1.
Pair wise (%) sequence identities of DNA genome of begomovirus under study (ToLCSDV-tomato-Jeddah-KT033711) with selected begomoviruses at nucleotide (nt) and amino acid (aa) levels
| Accession Nos. | Abbreviation | Host | Location | Percent identity matrix at nucleotides and amino acid level of KT033711-ToLCSDV-tomato-Jeddah with selected Begomovirus | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| DNA-A Full (nt) |
V2 (aa) | V1 (aa) |
C3 (aa) |
C2 (aa) |
C1 (aa) |
C4 (aa) |
||||
| KT033710 | ToLCSDV | Amaranthus | Jeddah | 99.9 | 99.6 | 99.8 | 99.7 | 99.8 | 99.9 | 99.8 |
| HG530539 | ToLCSDV | Tomato | S. Arabia | 99.8 | 99.5 | 99.7 | 99.6 | 99.7 | 99.8 | 99.7 |
| JF919733 | ToLCSDV | Tobacco | Yemen | 91.5 | 95.6 | 97.2 | 85.8 | 85.9 | 91.6 | 74.0 |
| JF919734 | ToLCSDV | Tobacco | Yemen | 90.3 | 93.9 | 97.2 | 87.3 | 87.4 | 88.8 | 56.0 |
| KC845301 | TYLCV | Tomato | S. Arabia | 91.6 | 62.3 | 98.1 | 85.8 | 88.1 | 91.6 | 69.0 |
| KF561125 | TYLCV | Tomato | S. Arbia | 91.5 | 94.8 | 91.0 | 73.1 | 86.6 | 84.8 | 68.6 |
| KF040453 | TYLCV | Tomato | S. Arabia | 91.2 | 98.2 | 91.0 | 74.6 | 89.6 | 82.8 | 67.6 |
| JN591386 | ToLCSDV | Tomato | Oman | 92.2 | 96.5 | 98.0 | 88.0 | 88.1 | 86.2 | 77.0 |
| FJ956700 | TYLCV-OM[OM-Alb22-05] | Tomato | Oman | 88.5 | 93.1 | 77.9 | 85.0 | 81.4 | 75.7 | 73.0 |
| KF444467 | ToLCSDV | green bean | S. Arabia | 89.7 | 92.3 | 96.4 | 85.8 | 85.9 | 87.1 | 71.0 |
| KF561125 | TYLCV | Tomato | S. Arabia | 91.5 | 98.2 | 91.0 | 73.1 | 86.6 | 84.8 | 68.6 |
| HE819244 | ToLCSDV | Tomato | Oman | 91.5 | 98.2 | 91.8 | 74.6 | 88.8 | 85.7 | 70.0 |
| JN591385 | ToLCSDV | Tomato | Oman | 91.2 | 98.2 | 92.2 | 75.3 | 87.4 | 85.9 | 77.0 |
| JN591386 | ToLCSDV | Tomato | Oman | 92.1 | 98.2 | 98.0 | 88.0 | 88.1 | 86.2 | 77.0 |
| AY044139 | ToLCSDV-Sha[SD-Sha-96] | Tomato | Sudan | 92.4 | 98.2 | 97.2 | 85.8 | 88.1 | 93.8 | 82.0 |
| JX483708 | ToLCSDV-Sha[SD-Sha-4.2] | Tomato | Sudan | 91.9 | 95.6 | 97.2 | 85.8 | 81.4 | 93.3 | 75.0 |
| JF919731 | ToLCSDV-Tih:tom1:05 | Tomato | Yemen | 89.7 | 96.5 | 96.8 | 78.3 | 77.0 | 91.6 | 69.0 |
| EF110891 | ToLCSDV-YE[YE-05] | Tomato | Yemen | 89.7 | 96.5 | 96.8 | 78.3 | 77.0 | 91.6 | 69.0 |
| KC763630 | ToLCSDV -[SD-WM-11] | Tomato | Sudan | 88.3 | 90.5 | 96.1 | 86.5 | 87.4 | 91.0 | 72.0 |
| AY044137 | ToLCSDV-Gez[SD-Gez-96] | Tomato | Sudan | 88.5 | 93.9 | 97.2 | 85.8 | 81.4 | 89.9 | 72.0 |
| AY044138 | ToLCSDV-Gez[SD-Gez | Tomato | Sudan | 82.9 | 93.9 | 76.3 | 82.8 | 84.4 | 93.0 | 66.0 |
| GU180085 | ToLCSDV -[Wad Madani] | Tomato | Sudan | 88.5 | 92.2 | 96.8 | 85.8 | 82.2 | 90.2 | 72.0 |
| DQ358913 | TYLCMLV-ET[ET-Mel-05] | Tomato | Ethiopia | 83.2 | 94.8 | 76.7 | 85.0 | 86.6 | 90.2 | 72.0 |
| DQ644565 | TYLCV- Al-Batinah | Tomato | Oman | 78.9 | 93.9 | 77.9 | 83.5 | 82.9 | 82.4 | 71.0 |
| GU076448 | TYLCV- [Kahnooj:Iran] | Tomato | Iran | 83.7 | 92.2 | 77.9 | 83.5 | 82.2 | 81.2 | 66.0 |
| KC106648 | TYLCV-IL[IR:Boj:A1] | Tomato | Iran | 79.1 | 92.2 | 78.2 | 82.0 | 80.0 | 80.0 | 38.0 |
ToLCV tomato leaf curl virus, ToLCSDV tomato leaf curl Sudan virus, TYLCV tomato yellow leaf curl virus, TYLCMLV-ET[ET-Mel-05] tomato yellow leaf curl Mali virus, S. Arabia (Saudi Arabia)