TABLE 2.
PCR primers used in this study
| Gene | Primer | Sequence | Source or reference |
|---|---|---|---|
| 16S rDNA | 16F27 | GAAGTCGTAACAAGG | 14 |
| 16R1488 | CAAGGCATCCACC | 14 | |
| 16fps158 | GTGGGGACAACGTTTC | 1 | |
| 16rps743 | CGATTATGACTGTGACTCCAC | 1 | |
| ITS1 | 16F945 | GGGCCCGCACAAGCGGTGG | 8 |
| 23R458 | CTTTCCCTCACGGTAC | 8 | |
| rrn16S | GAAGTCGTAACAAGG | 8 | |
| rrn23S | CAAGGCATCCACCGT | 8 | |
| gyrB | APrU | TGTAAAACGACGGCCAGTGCNGGRTCYTTYTCYTGRCA | 34 |
| M13 (−21) | TGTAAAACGACGGCCAGT | 34 | |
| UP1E | CAGGAAACAGCTATGACCAYGSNGGNGGNAARTTYRA | 34 | |
| M13R | CAGGAAACAGCTATGACC | 34 | |
| rpoD | 70F | ACGACTGACCCGGTACGCATGTAYATGMGNGARATGGGNACNGT | 34 |
| 70Fs | ACGACTGACCCGGTACGCATGTA | 34 | |
| 70R | ATAGAAATAACCAGACGTAAGTTNGCYTCNACCATYTCYTTYTT | 34 | |
| 70Rs | ATAGAAATAACCAGACGTAAGTT | 34 | |
| catA | 1C120F | CSSCGCACCATCGAAGG | 6 |
| 2C120R | SGCAAAGTCGTCCCACAG | 6 | |
| 3C120 | GGMGARTGGCCGCTGT | This study | |
| 4C120 | GGTGCAGGTGSGCGG | This study | |
| C12F | AGMTSGTCAACCGCATC | This study | |
| 8C12R | GTTGATCTGGGTGGTCAG | This study | |
| C1STF | CATGGAYGACGGYAGCG | This study | |
| C1STR | CCVGCCAGGTTGATCTG | This study | |
| nahH | 4C230 | TCCSTGGTGCTRCGYGA | This study |
| 3C230 | GATVGAKGTRTCGGTCATG | This study | |
| nosZ | U1672 | GGCCCGCTGMABCCSGARAACGANCARYTGATCGA | This study |
| L2140 | CATYTCCATGTGCAKSGCRTGGCAGAACCA | This study |