TABLE 2.

Strain W83 genes that are hightly divergent in ATCC 33277 with an EPP cutoff of <20%

Gene no.	Encoded protein	ORF	Sample size	EPP (%)	Mean score	Standard deviation	Variance
1	ISPg4, transposase	PG0019	13	1	−0.49	0.04	0.00
2	ISPg4, transposase	PG0050	1	0	−0.50	0.00	0.00
3	Null	PG0051 (ORF00091)	1	15	−0.35	0.00	0.00
4	Hypothetical protein	PG0089	1	0	−0.50	0.00	0.00
5	Glycosyl transferase, group 1 family protein	PG0110	14	12	−0.38	0.16	0.03
6	Capsular polysaccharide biosynthesis gene putative	PG0111	14	18	−0.32	0.28	0.08
7	Null, conserved hypothetical protein, authentic frameshift	PG0112 (ORF00191)	14	18	−0.32	0.27	0.07
8	Hypothetical protein	PG0113	14	15	−0.35	0.17	0.03
9	Hypothetical protein	PG0114	13	8	−0.42	0.11	0.01
10	Polysaccharide transport protein, putative	PG0117	14	9	−0.41	0.13	0.02
11	Glycosyl transferase, group 2 family protein	PG0118	11	10	−0.40	0.18	0.03
12	Lipoprotein RagB	PG0186	14	13	−0.37	0.18	0.03
13	Hypothetical protein	PG0244	1	15	−0.35	0.00	0.00
14	Secretion activator protein, putative	PG0293	1	0	−0.50	0.00	0.00
15	Hypothetical protein	PG0410	4	18	−0.33	0.10	0.01
16	Hypothetical protein	PG0421	2	18	−0.33	0.03	0.00
17	ISPg5, transposase Orf1	PG0427	2	18	−0.33	0.03	0.00
18	ISPg5, transposase Orf1	PG0459	14	4	−0.46	0.09	0.01
19	Type I restriction modification system, M subunit, putative	PG0544	13	19	−0.31	0.16	0.03
20	Hypothetical protein	PG0565	13	15	−0.35	0.14	0.02
21	Hypothetical protein	PG0626	14	13	−0.38	0.14	0.02
22	ABC transporter, permease protein, putative	PG0683	14	12	−0.38	0.16	0.03
23	Hypothetical protein	PG0717	14	11	−0.39	0.14	0.02
24	Antigen PgaA	PG0742	14	11	−0.39	0.15	0.02
25	Integrase	PG0820	14	1	−0.49	0.02	0.00
26	Hypothetical protein	PG0821	13	11	−0.39	0.26	0.07
27	MATE efflux family protein	PG0827	14	12	−0.38	0.14	0.02
28	RteC protein, truncation	PG0828	11	19	−0.31	0.28	0.08
29	Integrase	PG0838	13	8	−0.42	0.13	0.02
30	Conserved hypothetical protein	PG0839	14	7	−0.43	0.08	0.01
31	Hypothetical protein	PG0848	13	18	−0.32	0.16	0.03
32	Conserved hypothetical protein	PG0859	14	15	−0.35	0.18	0.03
33	Hypothetical protein	PG0892	1	0	−0.50	0.00	0.00
34	ISPg1, transposase, authentic frameshift	PG0939	1	0	−0.50	0.00	0.00
35	ISPg4, transposase	PG0970	2	18	−0.33	0.03	0.00
36	Conserved hypothetical protein	PG1057	1	0	−0.50	0.00	0.00
37	Hypothetical protein	PG1059	1	0	−0.50	0.00	0.00
38	Hypothetical protein	PG1102	14	1	−0.49	0.04	0.00
39	Hypothetical protein	PG1107	14	15	−0.35	0.16	0.02
40	Null (PG1275 hypothetical)	PG1275 (ORF02037a)	1	0	−0.50	0.00	0.00
41	RteC protein, truncation	PG1445	8	19	−0.31	0.29	0.08
42	Conserved hypothetical protein	PG1449	13	15	−0.35	0.17	0.03
43	Conserved hypothetical protein	PG1450	2	15	−0.35	0.15	0.02
44	Integrase	PG1454	14	2	−0.48	0.05	0.00
45	Conserved domain protein	PG1512	11	5	−0.45	0.10	0.01
46	O-Succinylbenzoic acid-coenzyme A ligase	PG1521	4	11	−0.39	0.11	0.01
47	Toprim domain protein	PG1533	2	8	−0.43	0.08	0.01
48	HDIG domain protein	PG1592	1	15	−0.35	0.00	0.00
49	Isoleucyl-tRNA synthetase	PG1596	1	0	−0.50	0.00	0.00
50	ISPg5, transposase Orf2	PG1644	14	2	−0.48	0.04	0.00
51	ISPg5, transposase Orf1	PG1645	5	14	−0.36	0.26	0.07
52	Hypothetical protein	PG1685	4	1	−0.49	0.02	0.00
53	ISPg5, transposase Orf1	PG1709	4	1	−0.49	0.02	0.00
54	Null, hypothetical protein	PG1740 (ORF02751)	1	0	−0.50	0.00	0.00
55	Hypothetical protein	PG1988	4	10	−0.40	0.12	0.02
56	Hypothetical protein	PG2008	1	0	−0.50	0.00	0.00
57	Hypothetical protein	PG2018	14	17	−0.33	0.18	0.03
58	ISPg5, transposase Orf1	PG2058	4	6	−0.44	0.08	0.01
59	Hypothetical protein	PG2095	1	0	−0.50	0.00	0.00
60	Immunoreactive 63-kDa antigen PG102	PG2100	13	19	−0.31	0.17	0.03
61	ISPg5, transposase Orf1	PG2129	13	12	−0.38	0.15	0.02
62	Hypothetical protein	PG2136	14	15	−0.35	0.15	0.02
63	Hypothetical protein	PG2203	1	5	−0.45	0.00	0.00
64	Hypothetical protein	PG2204	2	0	−0.50	0.00	0.00