Table 5.
Top scoring 20 peptides (12-mers) found in protein sequences belonging to different gut associated species of Lactobacillus and Bifidobacterium.
| Peptide sequence | Uniprot | Protein | Species | Num. motifs | SVM score |
|---|---|---|---|---|---|
| KKLFKVVKKRGI | Q74IG8 | Peptide chain release factor 3 | Lactobacillus johnsonii (strainCNCMI-12250) | 4 | 0.63 |
| IKQVKKLFKKWG | P80214 | Bacteriocin plantaricin-A | Lactobacillus plantarum (strainATCCBAA-793) | 1 | 0.51 |
| AIKQVKKLFKKW | P80214 | Bacteriocin plantaricin-A | Lactobacillus plantarum (strainATCCBAA-793) | 1 | 0.49 |
| TKKLFKVVKKRG | Q74IG8 | Peptide chain release factor 3 | Lactobacillus johnsonii (strainCNCMI-12250) | 4 | 0.47 |
| KKRIHELLRTLK | Q8G838 | Putative ABC transporter ATP-binding protein BL0043 | Bifidobacterium longum (strainNCC2705) | 1 | 0.41 |
| DRIKKAAKKIQN | Q74K31 | Glucose-6-phosphate isomerase | Lactobacillus johnsonii (strainCNCMI-12250) | 1 | 0.38 |
| RIKKAAKKIQND | Q74K31 | Glucose-6-phosphate isomerase | Lactobacillus johnsonii (strainCNCMI-12250) | 1 | 0.38 |
| KQVKKLFKKWGW | P80214 | Bacteriocin plantaricin-A | Lactobacillus plantarum (strainATCCBAA-793) | 1 | 0.37 |
| QTKKLFKVVKKR | Q74IG8 | Peptide chain release factor 3 | Lactobacillus johnsonii (strainCNCMI-12250) | 4 | 0.36 |
| NRKKHVIRVCQD | Q8G3S4 | tRNA(Ile)-lysidine synthase | Bifidobacterium longum (strainNCC2705) | 2 | 0.35 |
| NRKKHVIRVCQD | B7GP48 | tRNA(Ile)-lysidine synthase | Bifidobacterium longum subsp. infantis (strainATCC15697) | 2 | 0.35 |
| NRKKHVIRVCQD | B3DR08 | tRNA(Ile)-lysidine synthase | Bifidobacterium longum (strainDJO10A) | 2 | 0.35 |
| RIGDRVIRAARV | Q8G6W2 | Protein Grp E | Bifidobacterium longum (strainNCC2705) | 1 | 0.31 |
| RIGDRVIRAARV | A1A3P4 | Protein Grp E | Bifidobacterium adolescentis (strainATCC15703) | 1 | 0.31 |
| RKKHVIRVCQDG | Q8G3S4 | tRNA(Ile)-lysidine synthase | Bifidobacterium longum (strainNCC2705) | 5 | 0.30 |
| RKKHVIRVCQDG | B7GP48 | tRNA(Ile)-lysidine synthase | Bifidobacterium longum subsp. infantis (strainATCC15697) | 5 | 0.30 |
| RKKHVIRVCQDG | B3DR08 | tRNA(Ile)-lysidine synthase | Bifidobacterium longum (strainDJO10A) | 5 | 0.30 |
| QAKKRIHELLRT | Q8G838 | Putative ABC transporter ATP-bindingproteinBL0043 | Bifidobacterium longum (strainNCC2705) | 1 | 0.29 |
| PAAVLLKKAAKV | P62435 | 50S ribosomal protein L11 | Lactobacillus johnsonii (strainCNCMI-12250) | 1 | 0.29 |
| DKIVKKIFKKYS | P62471 | Ribosomal RNA small subunit methyl transferase H | Lactobacillus johnsonii (strainCNCMI-12250) | 2 | 0.26 |
| IKKAYRKLSKKY | Q88VM1 | Chaperone protein DnaJ | Lactobacillus plantarum (strainATCCBAA-793/NCIMB8826/WCFS1) | 10 | 0.25 |
| KIVKKIFKKYSE | P62471 | Ribosomal RNA small subunit methyl transferase H | Lactobacillus johnsonii (strainCNCMI-12250) | 4 | 0.24 |
| AQAKKRIHELLR | Q8G838 | Putative ABC transporter ATP-binding protein BL0043 | Bifidobacterium longum (strainNCC2705) | 1 | 0.23 |
| AKKRIHELLRTL | Q8G838 | Putative ABC transporter ATP-binding protein BL0043 | Bifidobacterium longum (strainNCC2705) | 1 | 0.22 |
| EDKIVKKIFKKY | P62471 | Ribosomal RNA small subunit methyl transferase H | Lactobacillus johnsonii (strainCNCMI-12250) | 2 | 0.19 |