Table 5.
The most abundantly differentially expressed hormone-related genes between two cultivars.
| Gene ID | Arabidopsis | Gene annotation | Related Hormone | Expression level (FPKM) | Cluster | |
|---|---|---|---|---|---|---|
| SS-NP | SU-NP | |||||
| evm.TU.supercontig_27.36 | AT2G33790 | Arabinogalactan protein 30 | Abscisic acid | 126.905 | 10.0667 | K2 |
| evm.TU.supercontig_14.88 | AT5G14920 | Gibberellin-regulated family protein | Gibberellin | 33.3247 | 2.15195 | K2 |
| evm.TU.supercontig_41.42 | AT1G02205 | Fatty acid hydroxylase superfamily | Abscisic acid | 184.548 | 24.8403 | K2 |
| evm.TU.supercontig_157.25 | AT5G59310 | Lipid transfer protein 4 | Abscisic acid | 83.6708 | 1225.39 | K3 |
| evm.TU.supercontig_50.27 | AT3G23230 | Integrase-type DNA-binding superfamily protein | Ethylene | 3.81205 | 79.7241 | K3 |
| evm.TU.supercontig_157.27 | AT5G59310 | Lipid transfer protein 4 | Abscisic acid | 23.3339 | 433.616 | K3 |
| evm.TU.supercontig_34.60 | AT1G34670 | Myb domain protein 93 | Abscisic acid auxin salicylic acid | 26.4289 | 555.113 | K3 |
| evm.TU.supercontig_6.348 | AT2G17500 | Auxin efflux carrier family protein | Auxin | 18.3344 | 199.704 | K4 |
| evm.TU.supercontig_50.56 | AT5G45710 | Winged-helix DNA-binding transcription factor family protein | Auxin ethylene | 7.74852 | 96.4934 | K4 |
| evm.TU.supercontig_5.242 | AT2G38470 | WRKY DNA-binding protein 33 | Abscisic acid | 44.8722 | 421.063 | K4 |
| evm.TU.supercontig_101.16 | AT2G44840 | Ethylene-responsive element binding factor 13 | Ethylene | 12.759 | 131.366 | K4 |
| evm.TU.supercontig_145.21 | AT2G47190 | Myb domain protein 2 | Abscisic acid ethylene salicylic acid | 41.5383 | 363.428 | K4 |
| evm.TU.supercontig_23.98 | AT3G24500 | Multiprotein bridging factor 1C | Ethylene abscisic acid | 21.5776 | 176.415 | K4 |
| evm.TU.contig_34243.1 | AT2G29420 | Glutathione S-transferase tau 7 | Salicylic acid | 29.2826 | 234.884 | K4 |
| evm.TU.supercontig_3.494 | AT1G68320 | Myb domain protein 62 | Salicylic acid | 23.1542 | 170.373 | K4 |
| evm.TU.supercontig_48.133 | AT5G26920 | Cam-binding protein 60-like G | Salicylic acid | 49.9857 | 327.068 | K4 |
| evm.TU.supercontig_3.54 | AT4G23810 | WRKY family transcription factor | Salicylic acid | 67.3238 | 442.734 | K4 |
| evm.TU.supercontig_59.60 | AT2G29420 | Glutathione S-transferase tau 7 | Salicylic acid | 29.6253 | 202.733 | K4 |
| evm.TU.supercontig_2.408 | AT2G30020 | Protein phosphatase 2C family protein | Abscisic acid | 59.7727 | 403.526 | K4 |
| evm.TU.supercontig_74.83 | AT4G25480 | Dehydration response element B1A | Salicylic acid | 11.6146 | 75.5762 | K4 |
| evm.TU.supercontig_3.487 | AT4G21410 | Cysteine-rich RLK (RECEPTOR-like protein kinase) 29 | Abscisic acid | 2.49472 | 19.0917 | K4 |
| evm.TU.supercontig_129.23 | AT5G65670 | Indole-3-acetic acid inducible 9 | Auxin | 49.3207 | 288.859 | K4 |
| evm.TU.supercontig_14.99 | AT5G61430 | NAC domain containing protein 100 | Brassinosteroid | 6.85613 | 43.7501 | K4 |
| evm.TU.supercontig_111.6 | AT3G47600 | Myb domain protein 94 | Abscisic acid auxin ethylene jasmonic acid salicylic acid | 2.70301 | 15.5779 | K4 |
| evm.TU.contig_31100.1 | AT1G08920 | ERD (early response to dehydration) six-like 1 | Abscisic acid | 2.54556 | 17.2646 | K4 |
Genes were filtered by (1) FPKM≥2 in each libraries, (2) absolute fold change >2.5 and an FDR significance score < 0.01 for each gene between two cultivars.