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. 2016 May 13;5(5):e81. doi: 10.1038/cti.2016.28

Table 4. Primers used for LMP-1 sequence analysis and EBNA-2 typing.

  Primer sequence Nested PCR run
LMP-1 primers
 LMP-168843R CTACAACAAAACTGGTGGACT 1st PCR
 LMP-168039F AGACAGTGTGGCTAAGGGAGT  
 LMP-168810R CTCCTTTGGCTCCTCCTGTT 2nd PCR
 LMP-168039F AGACAGTGTGGCTAAGGGAGT  
 LMP-168689R or LMP-168390R CTGGCCATGAATCTGACTCT AGCGACTCTGCTGGAAATGAT 3rd PCR
 LMP-168075F TGATTAGCTAAGGCATTCCCA  
     
EBNA-2 primers
 EBNA-2-48810F AGGGATGCCTGGACACAAGA 1st PCR
 EBNA-2-49411R TGTGCTGGTGCTGCTGGTGG  
 EBNA-2-1-Fa TCTTGATAGGGATCCGCTAGGATA 2nd PCR
 EBNA-2-1-Ra ACCGTGGTTCTGGACTATCTGGAC  
 EBNA-2-2-Fb CATGGTAGCCTTAGGACATA 2nd PCR
 EBNA-2-2-Rb AGACTTAGTTGATGCCCTAG  

Abbreviations: EBV, Epstein–Barr virus; EBNA-1, EBV nuclear antigen 1; LMP, latent membrane protein.

a

EBNA-2 type 1 EBV yields a 497 bp product.

b

EBNA-2 type 2 EBV yields a 162 bp product.