Table 1.
CDBG used in this study
| CDBG Id | Reads Id | k | c | Number of unitigs | Mean length of unitigs |
|---|---|---|---|---|---|
| E.coli | SRR959239 | 31 | 3 | 42,843 | 134 |
| C.elegans_norm | SRR065390 | 31 | 3 | 1,627,335 | 93 |
| C.elegans_cpx | SRR065390 | 21 | 2 | 8,273,338 | 34 |
| Human | SRR345593 | 31 | 10 | 69,932,343 | 70 |
| SRR345594 |
C.elegans_cpx and C.elegans_norm are two distinct graphs, constructed using the same read set from C.elegans genome. The suffixes norm and cpx respectively stand for “normal” (using c=3 and k=31) and for “complex” (using a low threshold c=2 and small value k=21)