Table 3.
Time and memory footprints of BGREAT and BOWTIE2
| BGREAT | BOWTIE2 | ||||||
|---|---|---|---|---|---|---|---|
| CDBG Id | Mapped set | Wall clock time | CPU time | Memory | Wall clock time | CPU time | Memory |
| (nb reads) | |||||||
| E.coli | SRR959239 | 28 s | 1m40 | 19 MB | 1m17 | 3m53 | 29 MB |
| (5,128,790) | |||||||
| C.elegans_cpx | SRR065390 | 19m21 | 72m31 | 975 MB | 8m12 | 33m | 1.66 GB |
| (67,155,743) | |||||||
| C.elegans_norm | ′′ | 13m03 | 51m28 | 336 MB | 17m49 | 72m31 | 493 MB |
| C.elegans_norm | SRR1522085 | 1m54 | 7m13 | 336 MB | 3m29 | 14m12 | 493 MB |
| (22,509,110) | |||||||
| Human | SRR345593 | 4h30 | 87 h | 9.7 GB | 4h38 | 90h15 | 21 GB |
| SRR345594 | |||||||
| (2,967,536,821) | |||||||
Indicated wall clock times use four cores, except for the human samples for which 20 cores were used