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. Author manuscript; available in PMC: 2016 Jun 16.
Published in final edited form as: Hum Hered. 2014 Jul 8;78(1):47–58. doi: 10.1159/000363411

Table 4.

Allele frequency distribution of SNPs (n = 39) studied in the AIR registry

Gene or
nearest gene		 SNP ID Chromosome position
using genome build 37.3		 Chromosome Major
allele		 Major allele
frequency		 Minor
allele		 Minor allele
frequency
NOTCH2 rs10923931 120,517,959 1 G 0.9322 T 0.0678
PROX1 rs340874 214,159,256 1 T 0.6140 C 0.3860
GCKR rs780094 27,741,237 2 C 0.6797 T 0.3203
G6PC2 rs560887 169,763,148 2 C 0.8726 T 0.1274
THADA rs7578597 43,732,823 2 T 0.9450 C 0.0550
ADAMTS9 rs4607103 64,711,904 3 C 0.6647 T 0.3353
ADCY5 rs11708067 123,065,778 3 A 0.6902 G 0.3098
IGF2BP2 rs4402960 185,511,687 3 G 0.7187 T 0.2813
SLC2A2 rs11920090 170,717,521 3 T 0.8746 A 0.1254
WFS1 rs10010131 6,292,915 4 G 0.7187 A 0.2813
CDKAL1 rs10946398 20,661,034 6 A 0.7058 C 0.2942
GCK rs4607517 44,235,668 7 G 0.7902 A 0.2098
JAZF1 rs864745 28,180,556 7 T 0.6609 C 0.3391
LOC100128217 rs2191349 15,064,309 7 G 0.5957 T 0.4043
SLC30A8 rs13266634a 118,184,783 8 C 0.7777 T 0.2223
SLC30A8 rs11558471a 118,185,733 8 A 0.7610 G 0.2390
CDKN2A/B rs10811661 22,134,094 9 T 0.8740 C 0.1260
GLIS3 rs7034200 4,289,050 9 A 0.5685 C 0.4315
HHEX rs1111875 94,462,882 10 C 0.6342 T 0.3658
LOC100420392 rs10885122 113,042,093 10 G 0.8548 T 0.1452
TCF7L2 rs7901695b 114,754,088 10 T 0.7413 C 0.2587
TCF7L2 rs4506565b 114,756,041 10 A 0.7392 T 0.2608
TCF7L2 rs7903146b 114,758,349 10 C 0.7610 T 0.2390
TCF7L2 rs12243326b 114,788,815 10 T 0.8094 C 0.1906
TCF7L2 rs12255372b 114,808,902 10 G 0.8048 T 0.1952
CRY2 rs11605924 45,873,091 11 A 0.5026 C 0.4974
FADS1 rs174550 61,571,478 11 C 0.6137 T 0.3863
KCNJ11 rs5215 17,408,630 11 T 0.6392 C 0.3608
MADD rs7944584 47,336,320 11 A 0.8586 T 0.1414
MTNR1B rs10830963 92,708,710 11 C 0.7689 G 0.2311
IGF1 rs35767 102,875,569 12 G 0.7888 A 0.2112
TSPAN8 rs7961581 71,663,102 12 T 0.8237 C 0.1763
FTO rs8050136c 53,816,275 16 C 0.7435 A 0.2565
FTO rs3751812c 53,818,460 16 G 0.7704 T 0.2296
FTO rs9939609c 53,820,527 16 T 0.7435 A 0.2565
FTO rs17818902 53,871,806 16 T 0.7456 G 0.2544
FTO rs7203051 53,876,149 16 G 0.5962 C 0.4038
FTO rs1075888 54,053,311 16 T 0.5212 G 0.4788
HNF1B rs4430796 36,098,040 17 A 0.5927 G 0.4073
a

Two SNPs in the SLC30A8 gene are in strong LD with r2 = 0.90.

b

Five SNPs in the TCF7L2 gene are in strong LD with r2 ranging from 0.86 to 0.99.

c

Three SNPs in the FTO gene are in strong LD with r2 ranging from 0.87 to 0.98.