Skip to main content
. 2016 Mar 8;17(5):498–506. doi: 10.1080/15384047.2016.1156266

Table 1.

Sequence information of each component of the complex.

  Amino Acids Sequence Comment
3TAT-DRBD GRKKRRQRRR GSH GRKKRRQRRR GSH GRKKRRQRRR GSHAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKA TAT, 10 amino acids, triple TAT expressed in series GSH as linkers 16 (underlined)DRBD, motif 1 of human PKR,36 80 amino acids, residues from 9-78
SA AEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGTTEANAWKSTLVGHATFTKVKPSAA natural core SA 39126 amino acids, residues from 21-130, 13.3 KDaD128A mutation (underlined)40
  Nucleic acids sequence Comment
sur-siRNA 5′ GAAGCAGTTTGAAGAATTA dTdT 3′ Fluorescent siRNAs labeled with FAM or Cy7 at the 5′ end of the sense strand.
A10 5′biotin-GGGAGGA(fC)GA(fU)G(fC)GGA(fU)(fC)AG(fC)(fC)A(fU)G(fU)(fU)(fU)A(fC)G(fU)(fC)A(fC)(fU)(fC)(fC)(fU)(fU)3′5′Cy7-GGGAGGA(fC)GA(fU)G(fC)GGA(fU)(fC)AG(fC)(fC)A(fU)G(fU)(fU)(fU)A(fC)G(fU)(fC)A(fC)(fU)(fC)(fC)(fU)(fU)-biotin 3′ To increase stability against nuclease degradation, the pyrimidines in the aptamer A10 were 2′-fluoro modified.
A10-(sur-siRNA) chimera 5′GGGAGGA(fC)GA(fU)G(fC)GGA(fU)(fC)AG(fC)(fC)A(fU)G(fU)(fU)(fU)A(fC)G(fU)(fC)A(fC)(fU)(fC)(fC)(fU)(fU)-GAAGCAGUUUGAAGAAUUA 3′ A10-(sur-siRNA antisense strand ) chimera After a simple annealing, the 2 strands form stable chimera.22
  5′FAM/Cy7-UAAUUCUUCAAACUGCUUC dTdT 3′ sur-siRNA sense strand The 5′ end of the sense strand was labeled with FAM or Cy7.