Table 2. Overview of the multi-query run.
| Thread number | Target | Reference | Result size (bp) | Assembly type | Number of iterations | ||||
|---|---|---|---|---|---|---|---|---|---|
| Region | Species | Accession number | Size (bp) | Specific | General | ||||
| 1 | mt | mt | F. oxysporum | NC_017930 | 34,477 | 49,697 | exhaustive | 18 | 3 |
| 2 | rDNA | IGS | F. oxysporum | FD_00403_IGS | 1,449 | 7,872 | exhaustive | 2 | 10 |
| 3 | IGS | IGS | F. oxysporum | FD_00403_IGS | 1,449 | 1,446 | exonerate | 1 | 1 |
| 4 | TEF1a | TEF1a | F. oxysporum | FD_00403_EF-1a | 689 | 684 | exonerate | 1 | 1 |
| 5 | TEF1a | TEF1a | F. oxysporum | FD_00403_EF-1a* | 652 | 647 | exonerate | 1 | 1 |
| 6 | TEF1a | TEF1a | F. graminearum | FD_00001_EF-1a | 643 | 647 | exonerate | 3 | 1 |
| 7 | TEF1a | TEF1a | F. solani | FD_01036_EF-1a | 677 | 647 | exonerate | 4 | 1 |
| 8 | RPB1 | RPB1 | F. oxysporum | FD_02003_RPB1 | 1,606 | 1,606 | exonerate | 1 | 1 |
| 9 | RPB2 | RPB2 | F. oxysporum | FD_02003_RPB2 | 1,762 | 1,899 | exonerate | 1 | 1 |
| 10 | RPB2 | RPB2 | F. oxysporum | FD_00120_RPB2-57 FD_00120_RPB2-711 |
879 860 |
1,876 | exonerate | 1 | 1 |
The accession numbers are either GenBank accessions or FusariumID (http://isolate.fusariumdb.org) accessions. The assembly type specifies which assembly mode was selected for the given thread during the GRAbB run. Multiple specific iterations are run only during the first general iteration.
*: This sequence was truncated to span the same region as FD_00001_EF-1a and FD_01036_EF-1a.