Table 2.
Phylum | Genus | Number of species on medium | |||||||||
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From Welsh onion rhizosphere | From onion rhizosphere | ||||||||||
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Trial 1 | Trial 2 | Trial 3 | Trial 4 | ||||||||
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R2Aa | 1/4 TSAb | R2A | R2A-C/Tc | R2A-C/T | PSR2A-C/Td | PSR2A-C/T | PSR2A-C/T/Ne | PSR2A-C/T | PSR2A-C/T/N | ||
Bacteroidetes | Flavobacterium | 5 | 5 | 4 | |||||||
Chryseobacterium | 1 | 1 | 4 | 8 | 6 | 1 | 5 | 3 | |||
Niabella | 2 | 2 | 14 | 9 | 2 | 4 | 6 | 6 | |||
Chitinophaga | 1 | 2 | 1 | 2 | |||||||
Niastella | 1 | 2 | |||||||||
Dyadobacter | 1 | ||||||||||
Taibaiella | 1 | 1 | 1 | 2 | |||||||
Flavitalea | 1 | ||||||||||
Proteobacteria | Sphingomonas | 22 | 1 | 6 | 1 | ||||||
Pseudoxanthomonas | 10 | 1 | |||||||||
Ralstonia | 3 | 2 | |||||||||
Sphingopyxis | 1 | 1 | 1 | ||||||||
Frateuria | 1 | ||||||||||
Luteibacter | 1 | ||||||||||
Lysobacter | 1 | ||||||||||
Rhodanobacter | 1 | ||||||||||
Pseudomonas | 1 | ||||||||||
Sphingobium | 1 | ||||||||||
Stenotrophomonas | 1 | 2 | |||||||||
Variovorax | 1 | ||||||||||
Actinobacteria | Microbacterium | 3 | 20 | 1 | 5 | 2 | |||||
Leifsonia | 1 | 3 | 2 | 5 | |||||||
Mycobacterium | 1 | 1 | |||||||||
Aeromicrobium | 1 | ||||||||||
Cellulosimicrobium | 1 | ||||||||||
Rhodococcus | 1 | ||||||||||
Terrabacter | 1 | ||||||||||
Agrococcus | 1 | ||||||||||
Total yellow/orange bacterial colonies | 38 | 33 | 14 | 14 | 17 | 19 | 20 | 15 | 23 | 19 | |
Total bacterial colonies | 97 | 49 | 121 | 106 | 169 | 183 | 248 | 201 | 132 | 155 |
Reasoner’s 2A agar
1/4-strength tryptic soy agar
Reasoner’s 2A supplemented with cycloheximide and tobramycin
Phosphate separately autoclaved R2A supplemented with cycloheximide and tobramycin
Phosphate separately autoclaved R2A supplemented with cycloheximide, tobramycin, and NaCl