Table 2. SNV and INDEL mutations in MMV008149.
| MMV008149-F1-ClB2 | MMV008149-F1-ClB7 | MMV008149-F2-ClE2 | MMV008149-F2-ClE3 | MMV008149-F3-ClB1 | MMV008149-F3-ClC10 | |
|---|---|---|---|---|---|---|
| Genome coverage (x) | 84.13 | 81.56 | 74.81 | 90.93 | 82.73 | 72.93 |
| % Covered by 15 or more reads | 95.6 | 95.7 | 95.6 | 95.7 | 95.8 | 95 |
| SNVs identified | ||||||
| Total mutations | 3 | 3 | 5 | 1 | 4 | 4 |
| Intergenic | 0 | 2 | 4 | 0 | 1 | 3 |
| Intronic | 0 | 0 | 0 | 0 | 0 | 0 |
| Synonymous | 2 | 0 | 0 | 0 | 2 | 0 |
| Non-synonymous | 1 | 1 | 1 | 1 | 1 | 1 |
| Genes mutated in all samples (mutation) | mal_mito_3 (cytochrome bc1) | |||||
| INDELs identified | ||||||
| Total mutations | 6 | 0 | 1 | 2 | 1 | 1 |
| Intergenic | 1 | 0 | 1 | 2 | 0 | 1 |
| Intronic | 1 | 0 | 0 | 0 | 0 | 0 |
| Frame shift | 1 | 0 | 0 | 0 | 1 | 0 |
| Codon INDEL | 3 | 0 | 0 | 0 | 0 | 0 |
| Genes mutated in all samples (mutation) | None | |||||
SNV and INDEL mutations were called and filtered using HaplotypeCaller for six clones isolated from three MMV008149 resistant flasks.