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. 2016 Jun 21;7:889. doi: 10.3389/fpls.2016.00889

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Copyright © 2016 Wu, Zhang and Li.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Screen capture of the result page from PAC analysis and the display of the APA site switching gene AT1G67680 in Arabidopsis. (A) Result page of PAC analysis module for detecting non-canonical APA site switching genes. Three replicates of WT leaf sample and WT root sample in Arabidopsis were chosen, and default parameters were used. A list of 21 APA site switching genes was returned. (B) Screenshot of the graph that presents both the gene model and the distributions of PACs/PATs of one APA site switching gene, AT1G67680. “sample1_sum” and “sample2_sum” denote the sum of PATs of each PAC in the selected groups, i.e., WT leaf and WT root, respectively. (C) Bar chart profiles the usage quantification of the two PACs of AT1G67680 involved in APA site switching. Shown are the ratios of PATs of the two PACs involved in APA site switching.