Table 1. Summary of RNA-Seq data based on the different tissues collected from moso bamboo.
| Tissue | Expected InnerDistance (bp)a | StandardDeviation (bp)b | Total BasePairs (bp)c | TotalReadsd | Total MappedReadse | PerfectMatchf | Mismatch(<=2 bp)g | UniqueMatchh | Multi-positionMatchi | UnmappedReadsj |
|---|---|---|---|---|---|---|---|---|---|---|
| LF | 229 | 43.29 | 7,940,029,694 | 75,061,531(100.00%) | 65,799,473(87.66%) | 47,086,647(62.73%) | 14,953,616(19.92%) | 28,517,274(37.99%) | 37,282,199(49.67%) | 9,262,061(12.34%) |
| RH | 222 | 47.92 | 8,100,321,514 | 84,229,772(100.00%) | 80,181,256(95.19%) | 56,701,555(67.32%) | 21,085,116(25.03%) | 33,042,653(39.23%) | 47,138,603(55.96%) | 4,048,516(4.81%) |
| RT | 201 | 54.35 | 7,709,128,042 | 73,771,970(100.00%) | 65,449,065(88.72%) | 45,734,234(61.99%) | 16,281,541(22.07%) | 24,121,167(22.07%) | 41,327,898(56.02%) | 8,322,905(11.28%) |
| SH | 248 | 51.40 | 27,945,422,424 | 285,876,190(100.00%) | 271,558,354(94.99%) | 224,043,003(78.37%) | 42,224,857(14.77%) | 118,238,306(41.36%) | 153,320,048(53.63%) | 14,317,836(5.01%) |
| PN | 216 | 55.51 | 8,065,743,156 | 83,872,774(100.00%) | 78,158,914(93.19%) | 49,616,883(59.16%) | 25,431,109(30.32%) | 29,373,018(35.02%) | 48,785,896(58.17%) | 5,713,860(6.81%) |
| Total | 59,760,644,830 | 602,812,237(100%) | 561,147,062(93.09%) | 423,182,322(70.20%) | 119,976,239(19.90%) | 233,292,418(38.70%) | 327,854,644(54.39%) | 41,665,178(6.91%) | ||
aExpected inner distance: the expected inner distance between mate pairs.
bStandard deviation: the standard deviation for the distribution on inner distances between mate pairs.
cTotal Base Pairs: the number of base pairs generated from sequencing after filtering low quality reads.
dTotal Reads: the number of reads generated from sequencing after filtering low quality reads.
eTotal Mapped Reads: the number of reads mapped to the reference genome within 2 bp mismatch.
fPerfect Match: the number of reads mapped to the reference genome with no mismatch.
gMismatch (<=2 bp): the number of reads mapped to the reference genome with no more than 2 bp mismatch.
hUnique Match: the number of reads mapped to the reference genome with unique position.
iMulti-position Match: the number of reads mapped to the reference genome with multi-position.
jUnmapped Reads: the number of reads that could not be mapped to the reference genome within 2 bp mismatch.