Table 2. Comparative profile of parental and placental CNVs. Data are given as means (medians), except when indicated otherwise. All, pooled duplication and deletion CNVs; n.a, not applicable; n.s, non-significant.
Parental blood DNA (n = 93) | Placental DNA (n = 57) | Placental/Parental genome ratio | Wilcoxon rank sum test P-value | ||
---|---|---|---|---|---|
Number of CNVs per sample | All | 9.5 (9.0) | 28.5 (23.0) | 3.0 (2.6) | <2.2 × 10−16 |
Duplication | 2.7 (3.0) | 15.3 (12.0) | 5.7 (4.0) | <2.2 × 10−16 | |
Deletion | 6.8 (7.0) | 13.2 (9.0) | 1.9 (1.3) | 5.6 × 10−5 | |
Cumulative span of all CNVs per sample, Mb | All | 0.8 (0.6) | 3.6 (2.4) | 4.5 (4.0) | 9.1 × 10−14 |
Duplication | 0.5 (0.3) | 2.0 (1.4) | 4.0 (4.7) | 7.6 × 10−13 | |
Deletion | 0.3 (0.3) | 1.5 (0.7) | 5.0 (2.3) | 1.1 × 10−7 | |
CNV length across samples, kb | All | 87.8 (23.0) | 124.7 (70.4) | 1.4 (3.1) | <2.2 × 10−16 |
Duplication | 183.8 (68.3) | 130.8 (74.9) | 0.7 (1.1) | n.s | |
Deletion | 49.8 (16.5) | 117.6 (63.8) | 2.4 (3.9) | <2.2 × 10−16 | |
CNV size range, kb | All | 0.3; 2392.4 | 0.3; 1814.4 | n.a | n.a |
Duplication | 2.2; 2392.4 | 2.2; 1814.4 | n.a | n.a | |
Deletion | 0.3; 1629.9 | 0.3; 1480.7 | n.a | n.a | |
Ratio (loss/gain) | 2.5 (2.3) | 0.9 (0.8) | 0.4 (0.3) | 2.9 × 10−14 |