Table 3. Subcellular sites and protein sequences distribution in D_R.

The multiple labeled set DRM			The single labeled set DRS
Ordinal	Subcellular location	The number of proteins	Ordinal	Subcellular location	The number of proteins
1	Apical Plasma Membrane	16	1	centrosome	44
2	Plasma Tube Basement Membrane	29	2	cytoplasm	508
3	Cellular Component Unknown	4	3	cytoskeleton	46
4	Centrosome	37	4	endoplasmic reticulum	77
5	Cytoplasm	542	5	endosome	163
6	Cytoplasmic Vesicle	29	6	extracellular matrix	419
7	Cell Scaffold	43	7	Golgi apparatus	125
8	Early Endosome	52	8	lysosome	86
9	Endoplasmic Reticulum	43	9	Micro Tube	11
10	Nuclear Body	179	10	mitochondria	355
11	ERGIC	4	11	nucleus	952
12	Extracellular Matrix	68	12	peroxisome	56
13	Golgi Apparatus	147	13	cell membrane	565
14	Golgi Cis Cisterna	7	14	synaptic vesicle	16
15	Golgi Trans Cisterna	3	15	Cytoplasmic Vesicle	17
16	Golgi Trans Face	11	16	Black Body	4
17	Mitochondrial Inner Membrane	4	17	Nuclear Membrane	1
18	Late Endosomes	16	18	Secretory Granules	1
19	Lipid Lowering Granule	1	19	Secretory Vesicle	2
20	Lysosome	39	\	\	\
21	Medial-Golgi	7	\	\	\
22	Black Body	2	\	\	\
23	Microtubule Organizing Center	1	\	\	\
24	Micro Tube	15	\	\	\
25	Mitochondrion	52	\	\	\
26	Nuclear Membrane	46	\	\	\
27	Nucleolus	268	\	\	\
28	Nucleus	768	\	\	\
29	Mitochondrial Outer Membrane	1	\	\	\
30	Peroxisome	11	\	\	\
31	Cell Membrane	271	\	\	\
32	Muscle Fiber Membrane	1	\	\	\
33	Secretory Granules	9	\	\	\
34	Secretory Vesicle	3	\	\	\
35	Synaptic Vesicle	12	\	\	\
36	Tight Junction	9	\	\	\
37	Transport Vesicle	4	\	\	\
The reconstructed multiple labeled set DRM					1354
The reconstructed single labeled set DRS					3448
The reconstructed protein subcellular localization data set DR					4802