Table 3. Oligo sequences containing GQSes used for polymerase stalling.
Oligo ID | Sequence (5′-3′) |
---|---|
Os3_CT | TCCAACTATGTATACTGAAGGGGAAGAGGGAAGAGGGGAAGAGGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
Os3_MCT | TCCAACTATGTATACTGAAGGGGAAGAGAGAAGAGGAGAAGAGAGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
Os4_CT | TCCAACTATGTATACTGAAGGGGGGTTGGGGGAGGGTGGGGAAAGTCGGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
Os4_MCT | TCCAACTATGTATACTGAAGGGGGGTTGGAGGAGAGTGGAGAAAGTCGGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
Os6_CT | TCCAACTATGTATACTGAAGGGGAGGAGGGAGAAGGGTGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
Os6_MCT | TCCAACTATGTATACTGAAGGAGAGGAGAGAGAAGAGTGAGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
Os9_CT | TCCAACTATGTATACTGAAGGGGCGCGAGGGAGGAGGGCGCGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
Os9_MCT | TCCAACTATGTATACTGAAGGGACGCGAGAGAGGAGAGCGCGAGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
Os11_CT | TCCAACTATGTATACTGAAGGGGACACGGGGGAGAACTTGGGCATGGGGAGGGTGGGCAGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
Os11_MCT | TCCAACTATGTATACTGAAGGGGACACGGAGGAGAACTTGAGCATGGAGAGAGTGGGCAGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
Bio_Primer | [Biotin]TAATACGACTCACTATAGCAATTGCGTG |
Sequences in bold and underline represent G residues predicted to be involved in GQS formation and their mutated counterparts in MCT oligos. CT: control oligos; MCT: mutated oligos.