Table 3. Oligo sequences containing GQSes used for polymerase stalling.
| Oligo ID | Sequence (5′-3′) |
|---|---|
| Os3_CT | TCCAACTATGTATACTGAAGGGGAAGAGGGAAGAGGGGAAGAGGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
| Os3_MCT | TCCAACTATGTATACTGAAGGGGAAGAGAGAAGAGGAGAAGAGAGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
| Os4_CT | TCCAACTATGTATACTGAAGGGGGGTTGGGGGAGGGTGGGGAAAGTCGGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
| Os4_MCT | TCCAACTATGTATACTGAAGGGGGGTTGGAGGAGAGTGGAGAAAGTCGGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
| Os6_CT | TCCAACTATGTATACTGAAGGGGAGGAGGGAGAAGGGTGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
| Os6_MCT | TCCAACTATGTATACTGAAGGAGAGGAGAGAGAAGAGTGAGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
| Os9_CT | TCCAACTATGTATACTGAAGGGGCGCGAGGGAGGAGGGCGCGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
| Os9_MCT | TCCAACTATGTATACTGAAGGGACGCGAGAGAGGAGAGCGCGAGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
| Os11_CT | TCCAACTATGTATACTGAAGGGGACACGGGGGAGAACTTGGGCATGGGGAGGGTGGGCAGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
| Os11_MCT | TCCAACTATGTATACTGAAGGGGACACGGAGGAGAACTTGAGCATGGAGAGAGTGGGCAGGGAAAATTAGCAACACGCAATTGCTATAGTGAGTCGTATTA |
| Bio_Primer | [Biotin]TAATACGACTCACTATAGCAATTGCGTG |
Sequences in bold and underline represent G residues predicted to be involved in GQS formation and their mutated counterparts in MCT oligos. CT: control oligos; MCT: mutated oligos.