Table 1.
List of the LHCXs identified in the diatom genomes
| Species | Name | ID | Chromosomal localization | Length (no. of amino acids) | No. of introns |
|---|---|---|---|---|---|
| Thalassiosira pseudonana | LHCX1 | 264921 | chr_23:365603–366232 (–) | 209 | 0 |
| LHCX2 | 38879 | chr_23:368273–368902 (+) | 209 | 0 | |
| LHCX4 | 270228 | chr_5:1446306–1447125 (–) | 231 | 0 | |
| LHCX5 | 31128 | chr_1:2849139–2850176 (–) | 236 | 3 | |
| LHCX6 | 12097 | chr_23:366611–367378 (+) | 255 | 0 | |
| Phaeodactylum tricornutum | LHCX1 | 27278 | chr_7:996379–997300 (+) | 206 | 1 |
| LHCX2 | 56312 | chr_1:2471232–2472170 (+) | 238 | 2 | |
| LHCX3 | 44733 | chr_5:76676–77606 (+) | 206 | 1 | |
| LHCX4 | 38720 | chr_17:53010–53733 (+) | 207 | 1 | |
| Pseudo-nitzschia multiseries | – | 66239 | scaffold_189:181982–182948 (+) | 201 | 1 |
| – | 238335 | scaffold_95:121459–122306 (–) | 202 | 1 | |
| – | 257821 | scaffold_246:124909–125745 (+) | 197 | 1 | |
| – | 264022 | scaffold_1353:8720–9877 (+) | 206 | 1 | |
| – | 283956 | scaffold_38:284133–284828 (–) | 231 | 0 | |
| Thalassiosira oceanica | – | Thaoc_09937 | SuperContig To_g10869: 4.331–5.040 (–) | 210 | 1 |
| – | Thaoc_12733 | SuperContig To_g15184: 10.800–11.435 (–) | 172 | 1 | |
| – | Thaoc_28991 | SuperContig To_g41561: 2.777–3.105 (+) | 81 | 1 | |
| – | Thaoc_31987 | SuperContig To_g45669: 1–1.025 (–) | 205 | 2 | |
| – | Thaoc_32497 | SuperContig To_g46152: 5.664–6.285 (–) | 180 | 1 |
For T. pseudonana (Thaps3), P. tricornutum (Phatr2), and P. multiseries (Psemu1), ID numbers refer to the genome annotation in the JGI database (http://genome.jgi.doe.gov/). For T. oceanica (ThaOc_1.0), ID refers to the Ensembl Protist database (http://protists.ensembl.org/Thalassiosira_oceanica/Info/Index?db=core). (+) and (–) indicate the forward and reverse chromosomal or scaffolds, respectively. The protein length and intron numbers are also indicated.