Table 3. MIP genes in S. biocolor.
| Gene Name | Accession No. | CL | Genomic location | PPL (aa) | Maximum identity with other MIP (%)x | PSCLy | Ka/Ks value | |
|---|---|---|---|---|---|---|---|---|
| Phytozome | NCBI | |||||||
| SbPIP1;1 | Sobic.006G176700.1 | XP_002446929 | 6 | 53192023..53194107 | 288 | AAO86706(98)b | PLAS, CHLO | 0.102 |
| SbPIP1;2 | Sobic.004G288700.1 | XP_002454508 | 4 | 63023013..63027206 | 289 | ACF84511(99)b | PLAS, CHLO | 0.039 |
| SbPIP1;3 | Sobic.004G351200.1 | XP_002453072 | 4 | 67981023..67983212 | 290 | NP_001105131(96)b | PLAS, CHLO | 0.156 |
| SbPIP1;4 | Sobic.010G087900.1 | XP_002438067 | 10 | 7521029..7522397 | 296 | NP_001105023(94)b | PLAS | 0.415 |
| SbPIP2;1 | Sobic.002G125700.2 | XP_002461936 | 2 | 16980280..16982926 | 286 | NP_001105027(98)b | PLAS, CHLO | 0.050 |
| SbPIP2;2 | Sobic.002G125300.1 | XP_002461933 | 2 | 16906986..16908387 | 286 | NP_001105027 (97)b | PLAS, CHLO | 0.048 |
| SbPIP2;3 | Sobic.002G125000.1 | XP_002461931 | 2 | 16883369..16884816 | 296 | NP_001105027(96)b | PLAS, CHLO | 0.080 |
| SbPIP2;4 | Sobic.002G125200.1 | XP_002461932 | 2 | 16897836..16899264 | 286 | NP_001105027(96)b | PLAS, CHLO | 0.135 |
| SbPIP2;5 | Sobic.004G222000.1 | XP_002452483 | 4 | 57220820..57224296 | 289 | NP_001105026(98)b | PLAS, CHLO | 0.156 |
| SbPIP2;6 | Sobic.006G150100.1 | XP_002446796 | 6 | 51145123..51147729 | 292 | NP_001105616(95)b | PLAS, CHLO | 0.134 |
| SbPIP2;7 | Sobic.002G124700.1 | XP_002461930 | 2 | 16844700..16848362 | 290 | NP_001105024(99)b | PLAS, CHLO | 0.260 |
| SbPIP2;8 | Sobic.K007000.1 | XP_002489214 | U | 2606152..2607000 | 282 | AFW68878(94)b | PLAS | 0.325 |
| SbPIP2;9 | Sobic.002G281000.2 | - | 2 | 66275305..66276988 | 289 | XP_004957505(84) c | PLAS, CHLO | 0.456 |
| SbTIP1;1 | Sobic.001G505100.1 | XP_002465859 | 1 | 77324938..77327995 | 250 | NP_001104896(94)b | PLAS | 0.376 |
| SbTIP1;2 | Sobic.003G445300.2 | XP_002459183 | 3 | 74316138..74319335 | 258 | ACF78734(91)b | CYTO | 0.362 |
| SbTIP2;1 | Sobic.004G295100.1 | XP_002452808 | 4 | Sobic.004G295100.1 | 249 | NP_001105030(90)b | PLAS | 0.144 |
| SbTIP2;2 | Sobic.006G170600.1 | XP_002448289 | 6 | 52722392..52723580 | 249 | XP_004976439(96)c | PLAS | 0.130 |
| SbTIP2;3 | Sobic.010G146100.1 | XP_002438430 | 10 | 41392271..41394011 | 248 | EAZ00793 (96) d | CYTO | 0.652 |
| SbTIP3;1 | Sobic.001G208500.1 | XP_002467022 | 1 | 19088973..19090440 | 266 | NP_001105032(94)b | MITO | 0.361 |
| SbTIP3;2 | Sobic.006G155300.1 | XP_002446824 | 6 | 51467369..51469051 | 268 | DAA36836(89)b | PLAS | 0.852 |
| SbTIP3;3 | Sobic.001G535900.2 | XP_002468661 | 1 | 79929261..79930715 | 271 | NP_001146930(88)b | PLAS | 0.510 |
| SbTIP4;1 | Sobic.003G007200.1 | XP_002457071 | 3 | 622245..623367 | 252 | ACG39579(95)b | CYTO | 0.591 |
| SbTIP4;2 | Sobic.009G085900.1 | XP_002439483 | 9 | 14570383..14573259 | 314 | ACG46456(92)b | VACU | 0.567 |
| SbTIP4;3 | Sobic.003G006600.1 | XP_002457068 | 3 | 572753..574763 | 318 | DAA53302(88)b | VACU | 0.550 |
| SbNIP1;1 | Sobic.003G026400.1 | XP_002454982 | 3 | 2231972..2234369 | 271 | AFW77428(77)b | CYTO | 0.393 |
| SbNIP1;2 | Sobic.009G075900.1 | XP_002440774 | 9 | 9905084..9909435 | 283 | NP_001151947(92)b | PLAS | 0.253 |
| SbNIP1;3 | Sobic.004G102200.1 | XP_002453573 | 4 | 9450179..9453286 | 287 | NP_001105721(94)b | CYSK | 0.453 |
| SbNIP1;4 | Sobic.010G164100.1 | - | 10 | 48401814..48403745 | 291 | XP_004967095(80)c | CYTO | 0.453 |
| SbNIP2;1 | Sobic.004G238100.1 | XP_002454286 | 4 | 58614722..58618581 | 297 | NP_001105637(97)b | PLAS | 0.343 |
| SbNIP2;2 | Sobic.010G092600.1 | XP_002438105 | 10 | 8195416..8200323 | 295 | NP_001105020(98)b | PLAS | 0.512 |
| SbNIP3;1 | Sobic.007G039600.1 | XP_002443852 | 7 | 3826797..3828613 | 297 | Q7EYH7(77) d | VACU | 0.777 |
| SbNIP3;2 | Sobic.007G039500.1 | XP_002445047 | 7 | 3812660..3815360 | 289 | AFW61239 (77)b | VACU | 0.343 |
| SbNIP3;3 | Sobic.007G038500.1 | XP_002445042 | 7 | 3735702..3736780 | 297 | AFW57375(70) b | CYTO | 0.512 |
| SbNIP3;4 | Sobic.001G195800.1 | XP_002464380 | 1 | 17588588..17593923 | 301 | ACN36318(95) b | PLAS | 1.053 |
| SbNIP4;1 | Sobic.003G098100.1 | XP_002455311 | 3 | 8668414..8671066 | 289 | ACL53915(85)b | PLAS | 0.844 |
| SbSIP1;1 | Sobic.005G091600.1 | XP_002449310 | 5 | 13565974..13569467 | 246 | NP_001105514(92)b | PLAS | 0.324 |
| SbSIP1;2 | Sobic.009G131500.1 | XP_002441068 | 9 | 48499291..48503602 | 243 | NP_001105028(96)b | PLAS | 0.319 |
| SbSIP2;1 | Sobic.001G389900.1 | XP_002465351 | 1 | 67642857..67645670 | 249 | NP_001105640(94)b | CHLO | 1.058 |
Where, CL: chromosome location, U: Unknown chromosomal location
xA gene that shows the highest identity with MIP in other plants by BLASTp. Parenthesis indicates the percentage of identity at the amino acid level.
bZea mays
cSetaria italica and
dOryza sativa Japonica Group