Table 2.
Recommended use of primers for different families, based on BLAST matches with no mismatches.a
Order | Family | Appropriate forward primer | Appropriate reverse primer |
Alismanthales | Alismataceae | matK-413f-2 | matK-1227r-1, matK-1227r-3 |
Araceae | matK-413f-2, matK-413f-5 | matK-1227r-1 | |
Apiales | Araliaceae | matK-413f-2, matK-413f-5 | matK-1227r-1, matK-1227r-4 |
Apiaceae | matK-413f-7 | matK-1227r-1, matK-1227r-5 | |
Aquifoliales | Aquifoliaceae | matK-413f-1 | matK-1227r-1, matK-1227r-3 |
Cardiopteridaceae (Gonocaryum minus) | matK-413f-1 | matK-1227r-1, matK-1227r-3 | |
Stemonuraceae | matK-413f-1 | matK-1227r-1, matK-1227r-3 | |
Arecales | Arecaceae (Arecaceae sp.) | matK-413f-2 | matK-1227r-1, matK-1227r-3 |
Asparagales | Amaryllidaceae | matK-413f-6 | matK-1227r-1, matK-1227r-3 |
Asparagaceae | matK-413f-6 | matK-1227r-1, matK-1227r-4, | |
matK-1227r-5 | |||
Hyacinthaceae | matK-413f-6 | matK-1227r-1, matK-1227r-3 | |
Iridaceae | matK-413f-6 | matK-1227r-1, matK-1227r-3, | |
matK-1227r-5 | |||
Orchidaceae (Polystachya humbertii) | matK-413f-1, matK-413f-2, | matK-1227r-1, matK-1227r-2, | |
matK-413f-3, matK-413f-6 | matK-1227r-3 | ||
Tecophilaeaceae | matK-413f-6 | matK-1227r-1 | |
Xanthorrhoeaceae | matK-413f-6 | matK-1227r-1, matK-1227r-5 | |
Asterales | Asteraceae (Leontodon hispidus) | matK-413f-1 | matK-1227r-1, matK-1227r-2, |
matK-1227r-3, matK-1227r-4, | |||
matK-1227r-5 | |||
Campanulaceae | matK-413f-2 | matK-1227r-1,matK-1227r-5 | |
Goodeniaceae | matK-413f-4 | matK-1227r-1 | |
Austrobaileyales | Austrobaileyaceae | matK-413f-2 | matK-1227r-2 |
Schisandraceae | matK-413f-2 | matK-1227r-2 | |
Trimeniaceae | matK-413f-2 | matK-1227r-2 | |
Berberidopsidales | Berberidopsidaceae | matK-413f-1 | matK-1227r-1 |
Boraginales | Boraginaceae | matK-413f-1, matK-413f-4 | matK-1227r-1, matK-1227r-3, |
matK-1227r-5 | |||
Ehretiaceae | matK-413f-1 | matK-1227r-1 | |
Brassicales | Brassicaceae | matK-413f-1, matK-413f-4, matK-413f-6 | matK-1227r-1, matK-1227r-5 |
Capparaceae | matK-413f-1 | matK-1227r-1 | |
Caricaeae | matK-413f-1 | matK-1227r-1 | |
Cleomaceae | matK-413f-1, matK-413f-3, | matK-1227r-1, matK-1227r-2, | |
matK-413f-4, matK-413f-7 | matK-1227r-4, matK-1227r-5 | ||
Moringaceae | matK-413f-1 | matK-1227r-1, matK-1227r-5 | |
Resedaceae | matK-413f-1 | matK-1227r-1 | |
Bruniales | Brunelliaceae | matK-413f-1 | matK-1227r-1 |
Buxales | Bucaceae | matK-413f-1 | matK-1227r-1 |
Caryophyllales | Amaranthaceae | matK-413f-1 | matK-1227r-1 |
Cactaceae | matK-413f-1 | matK-1227r-1 | |
Polygonaceae | matK-413f-1 | matK-1227r-1, matK-1227r-2, | |
matK-1227r-5 | |||
Simmondsiaceae | matK-413f-1 | matK-1227r-3 | |
Tamaricaceae | matK-413f-1 | matK-1227r-1 | |
Celastrales | Celastraceae | matK-413f-1, matK-413f-4, | matK-1227r-1, matK-1227r-2, |
matK-413f-6 | matK-1227r-3, matK-1227r-4, | ||
matK-1227r-5 | |||
Lepidobotryaceae | matK-413f-1 | matK-1227r-5 | |
Chloranthales | Chloranthaceae | matK-413f-2 | matK-1227r-1, matK-1227r-5 |
Commelinales | Commelinaceae | matK-413f-2 | matK-1227r-1 |
Haemodoraceae | matK-413f-2 | matK-1227r-1, matK-1227r-2, | |
matK-1227r-5 | |||
Cornales | Cornaceae (Alangium cf. javanicum, Mastixia sp.) | matK-413f-1, matK-413f-3 | matK-1227r-1, matK-1227r-3, |
matK-1227r-4, matK-1227r-5 | |||
Grubbiaceae | matK-413f-1 | matK-1227r-1 | |
Hydrangeaceae | matK-413f-1 | matK-1227r-1, matK-1227r-4 | |
Loasaceae | matK-413f-1, matK-413f-7 | matK-1227r-1, matK-1227r-4 | |
Crossosomatales | Stachyuraceae | matK-413f-1 | matK-1227r-1 |
Staphyleaceae | matK-413f-1 | matK-1227r-1, matK-1227r-5 | |
Strasburgeriaceae | matK-413f-1 | matK-1227r-1 | |
Cucurbitales | Anisophylleaceae (Anisophyllea sp.) | matK-413f-1, matK-413f-6 | matK-1227r-1 |
Begoniaceae | matK-413f-1, matK-413f-6 | matK-1227r-1 | |
Coriariaceae | matK-413f-2 | matK-1227r-1 | |
Cucurbitaceae | matK-413f-2 | matK-1227r-1, matK-1227r-3, | |
matK-1227r-4, matK-1227r-5 | |||
Datiscaceae | matK-413f-1 | matK-1227r-1 | |
Tetramelaceae | matK-413f-1 | matK-1227r-3, matK-1227r-5 | |
Dipsacales | Adoxaceae | matK-413f-4 | matK-1227r-1 |
Caprifoliaceae | matK-413f-1, matK-413f-5 | matK-1227r-1 | |
Ericales | Ebenaceae (Diospyros sp.) | matK-413f-1 | matK-1227r-1, matK-1227r-3, |
matK-1227r-6 | |||
Ericaceae | matK-413f-1, matK-413f-4 | matK-1227r-1, matK-1227r-5 | |
Lecythidaceae (Barringtonia curranii) | matK-413f-5 | matK-1227r-1 | |
Pentaphylacaceae | matK-413f-1 | matK-1227r-1 | |
Primulaceae (Ardisia sp.) | matK-413f-1, matK-413f-2 | matK-1227r-3, matK-1227r-1, | |
matK-1227r-5, matK-1227r-7 | |||
Styracaceae | matK-413f-1 | matK-1227r-1 | |
Symplocaceae (Symplocos crassipes) | matK-413f-1 | matK-1227r-1 | |
Theaceae | matK-413f-1 | matK-1227r-4 | |
Escalloniales | Escalloniaceae | matK-413f-1 | matK-1227r-1 |
Fabales | Fabaceae (Fordia splendidissima) | matK-413f-1, matK-413f-2, | matK-1227r-1, matK-1227r-3, |
matK-413f-4, matK-413f-6, | matK-1227r-5 | ||
matK-413f-7 | |||
Polygalaceae (Xanthophyllum beccarianum) | matK-413f-1, matK-413f-2 | matK-1227r-1 | |
Fagales | Betulaceae | matK-413f-2 | matK-1227r-1 |
Casuarinaceae | matK-413f-2 | matK-1227r-1 | |
Fagaceae (Lithocarpus sp.) | matK-413f-2 | matK-1227r-1, matK-1227r-3, | |
matK-1227r-5 | |||
Juglandaceae | matK-413f-1 | matK-1227r-1, matK-1227r-6 | |
Garryales | Garryaceae | matK-413f-1 | matK-1227r-1, matK-1227r-4, |
matK-1227r-6 | |||
Gentianales | Apocynaceae (Tabernaemontana sp.) | matK-413f-1, matK-413f-3, | matK-1227r-1, matK-1227r-2, |
matK-413f-4, matK-413f-5, | matK-1227r-6 | ||
matK-413f-6 | |||
Loganiaceae | matK-413f-1 | matK-1227r-1, matK-1227r-5 | |
Rubiaceae (Urophyllum sp., Psychotria sp.) | matK-413f-1, matK-413f-5 | matK-1227r-1, matK-1227r-2 | |
Geraniales | Geraniaceae | matK-413f-1, matK-413f-6 | matK-1227r-1 |
Melianthaceae | matK-413f-1, matK-413f-6 | matK-1227r-1 | |
Gunnerales | Gunneraceae | matK-413f-1, matK-413f-2 | matK-1227r-1 |
Huerteales | Dipentodontaceae | matK-413f-1 | matK-1227r-1 |
Gerrardinaceae | matK-413f-1 | matK-1227r-1 | |
Tapisciaceae | matK-413f-1 | matK-1227r-1, matK-1227r-5 | |
Icacinales | Icacinaceae | matK-413f-1 | matK-1227r-1, matK-1227r-3 |
Lamiales | Acanthaceae | matK-413f-1 | matK-1227r-1, matK-1227r-2, |
matK-1227r-4, matK-1227r-5 | |||
Gesneriaceae | matK-413f-1 | matK-1227r-1, matK-1227r-2, | |
matK-1227r-5 | |||
Lamiaceae (Teijsmanniodendron sp.) | matK-413f-1 | matK-1227r-1, matK-1227r-2, | |
matK-1227r-5 | |||
Lentibulariaceae | matK-413f-1 | matK-1227r-1 | |
Myrsinaceae | matK-413f-1 | matK-1227r-1 | |
Oleaceae | matK-413f-1 | matK-1227r-1, matK-1227r-2, | |
matK-1227r-3, matK-1227r-4 | |||
Orobanchaceae | matK-413f-1 | matK-1227r-1, matK-1227r-3, | |
matK-1227r-4 | |||
Laurales | Hernandiaceae | matK-413f-2 | matK-1227r-1 |
Lauraceae (Litsea sarawacensis) | matK-413f-2 | matK-1227r-1, matK-1227r-3 | |
Siparunaceae | matK-413f-2 | matK-1227r-3 | |
Liliales | Smilacaceae | matK-413f-2 | matK-1227r-1, matK-1227r-5 |
Magnoliales | Annonaceae | matK-413f-2 | matK-1227r-1, matK-1227r-4, |
matK-1227r-5 | |||
Degeneriaceae | matK-413f-2 | matK-1227r-1 | |
Eupomatiaceae | matK-413f-2 | matK-1227r-1 | |
Himantandraceae | matK-413f-2 | matK-1227r-1 | |
Magnoliaceae (Magnolia sp.) | matK-413f-2, matK-413f-6 | matK-1227r-1 | |
Myristicaceae | matK-413f-2, matK-413f-4 | matK-1227r-1, matK-1227r-5 | |
Malpighiales | Clusiaceae (Garcinia sp.) | matK-413f-1 | matK-1227r-1, matK-1227r-3, |
matK-1227r-4, matK-1227r-5 | |||
Euphorbiaceae | matK-413f-1 | matK-1227r-1, matK-1227r-3, | |
(Antidesma sp., Drypetes sp., Koilodepas sp., Macaranga hosei, Mallotus sp.) | matK-1227r-4, matK-1227r-5 | ||
Linaceae | matK-413f-1 | matK-1227r-1 | |
Passifloraceae | matK-413f-1 | matK-1227r-1 | |
Phyllanthaceae | matK-413f-1, matK-413f-2, | matK-1227r-1 | |
matK-413f-7 | |||
Putranjivaceae | matK-413f-1 | matK-1227r-5 | Rhizophoraceae |
matK-413f-5 | matK-1227r-1, matK-1227r-3 | Salicaceae | |
matK-413f-1 | matK-1227r-1, matK-1227r-5 | Violaceae (Rinorea sp.) | |
matK-413f-1 | matK-1227r-1, matK-1227r-6 | Malvales | |
Elaeocarpaceae | matK-413f-1 | ||
matK-1227r-1 | Malvaceae (Durio griffithii, Leptonychia sp., Sterculia sp.) | matK-413f-1 | matK-1227r-1 |
Myrtales | Lythraceae | matK-413f-1, matK-413f-5 | matK-1227r-1, matK-1227r-3 |
Melastomataceae | matK-413f-7 | matK-1227r-1, matK-1227r-4 | |
Myrtaceae (Syzygium sp.) | matK-413f-1, matL-413f-4, | matK-1227r-1, matK-1227r-3, | |
matK-413f-6 | matK-1227r-4, matK-1227r-5 | ||
Onagraceae | matK-413f-3 | matK-1227r-1 | |
Oxalidales | Brunelliaceae | matK-413f-1 | |
Cunoniaceae | matK-413f-1 | matK-1227r-1 | |
Huaceae | matK-413f-6 | matK-1227r-1 | |
Pandanales | Cyclanthaceae | matK-413f-2 | matK-1227r-1 |
Pandanaceae | matK-413f-2 | matK-1227r-1 | |
Paracryphiales | Paracryphiaceae | matK-413f-1 | matK-1227r-1 |
Piperales | Aristolochiaceae | matK-413f-2 | matK-1227r-1, matK-1227r-5 |
Piperaceae | matK-413f-2 | matK-1227r-3 | |
Saururaceae | matK-413f-2 | matK-1227r-1 | |
Poales | Bromeliaceae (Tillandsia cf. caloura) | matK-413f-2, matK-413f-6 | matK-1227r-1, matK-1227r-3 |
Typhaceae | matK-413f-2 | matK-1227r-1, matK-1227r-3 | |
Proteales | Nelumbonaceae | matK-413f-1 | matK-1227r-1 |
Platanaceae | matK-413f-1 | matK-1227r-1 | |
Proteaceae | matK-413f-1, matK-413f-2, | matK-1227r-1, matK-1227r-3, | |
matK-413f-3 | matK-1227r-4, matK-1227r-5 | ||
Ranunculales | Berberidaceae | matK-413f-3 | matK-1227r-1 |
Eupteleaceae | matK-413f-1, matK-413f-2 | matK-1227r-1 | |
Lardizabalaceae | matK-413f-1 | matK-1227r-1, matK-1227r-5 | |
Papaveraceae | matK-413f-1, matK-413f-2, | matK-1227r-1, matK-1227r-3, | |
matK-413f-3, matK-413f-5 | matK-1227r-5 | ||
Ranunculaceae | matK-413f-4 | matK-1227r-1, matK-1227r-6, | |
matK-1227r-4, matK-1227r-5 | |||
Rosales | Cannabaceae (Gironniera nervosa) | matK-413f-1, matK-413f-3 | matK-1227r-1, matK-1227r-3 |
Moraceae (Artocarpus elasticus) | matK-413f-1 | matK-1227r-3 | |
Rhamnaceae (Ziziphus angustifolius) | matK-413f-1, matK-413f-7 | matK-1227r-1, matK-1227r-3 | |
Rosaceae | matK-413f-1, matK-413f-2, | matK-1227r-1, matK-1227r-3, | |
matK-413f-6 | matK-1227r-4, matK-1227r-5 | ||
Ulmaceae | matK-413f-1 | matK-1227r-3 | |
Urticaceae | matK-413f-1 | matK-1227r-3 | |
Sabilales | Sabiaceae (Meliosma sumatrana) | matK-413f-1, matK-413f-2 | matK-1227r-1, matK-1227r-4 |
Santalales | Loranthaceae | matK-413f-4 | matK-1227r-1, matK-1227r-4 |
Opiliaceae | matK-413f-1, matK-413f-2 | matK-1227r-1 | |
Santalaceae | matK-413f-1, matK-413f-2 | matK-1227r-1, matK-1227r-5 | |
Schoepfiaceae | matK-413f-1 | matK-1227r-1, matK-1227r-4 | |
Sapindales | Meliaceae (Aglaia sp.) | matK-413f-1, matK-413f-7 | matK-1227r-1, matK-1227r-5 |
Rutaceae (Glycosmis macrantha) | matK-413f-1 | matK-1227r-1, matK-1227r-6, | |
matK-1227r-5 | |||
Sapindaceae (Lepisanthes sp.) | matK-413f-4 | matK-1227r-1, matK-1227r-3, | |
matK-1227r-5 | |||
Saxifragales | Cercidiphyllaceae | matK-413f-1, matK-413f-7 | matK-1227r-1 |
Haloragaceae | matK-413f-1 | matK-1227r-1 | |
Hamamelidaceae | matK-413f-1, matK-413f-5 | matK-1227r-1 | |
Paeoniaceae | matK-413f-1 | matK-1227r-1 | |
Saxifragaceae | matK-413f-1, matK-413f-4, | matK-1227r-1 | |
matK-413f-5 | |||
Solanales | Montiniaceae | matK-413f-1 | matK-1227r-1 |
Solanaceae | matK-413f-1, matK-413f-3 | matK-1227r-3 | |
Trochodendrales | Trochodendraceae | matK-413f-1, matK-413f-6 | matK-1227r-1 |
Vitales | Vitaceae | matK-413f-1 | matK-1227r-1, matk-1227r-2, |
matK-1227r-5 |
Species/genera in parentheses were successfully amplified in the family using the primer cocktail C_MATK_F/C_MATK_R.