Table 1.
Average number of SSR loci by repeat type and their location relative to identified open reading frames (ORFs). Note that percentages are based on unrounded values.
| SSR type | Avg. no. SSR loci (% of total) | Avg. no. with no overlap of ORF (% of type) | Avg. no. with any overlap of ORF (% of type) | Avg. no. with substantial (≥15 bp) overlap of ORF (% of type) |
| Compound | 176 (4) | 70 (40) | 106 (60) | 104 (59) |
| Complex compound | 7 (0) | 4 (49) | 4 (51) | 4 (50) |
| Mononucleotide | 1681 (39) | 833 (50) | 848 (50) | 46 (3) |
| Dinucleotide | 947 (22) | 436 (46) | 511 (54) | 99 (10) |
| Trinucleotide | 1427 (33) | 250 (18) | 1176 (82) | 472 (33) |
| Tetranucleotide | 55 (1) | 30 (54) | 25 (46) | 23 (41) |
| Pentanucleotide | 16 (0) | 9 (56) | 7 (44) | 6 (40) |
| Hexanucleotide | 20 (0) | 4 (21) | 16 (79) | 15 (79) |
| Total | 4328 (100) | 1635 (38) | 2693 (62) | 769 (18) |