Subject area	Biology
More specific subject area	Protein expression in Mytilus edulis
Type of data	Table,.xlsx file
How data was acquired	Data dependent LC-MS/MS acquired on a Q Exactive instrument (Thermo Fisher Scientific) coupled to a ultra nanoflow high-performance liquid chromatography (HPLC) system (EASY-nLC™ 1000, Thermo Fisher Scientific)
Data format	Processed, analyzed
Experimental factors	a)Lipopolysaccharide stimulation of blue mussels and protein extraction from gills
	a)LC-MS/MS analysis for protein identification and quantification
Experimental features	Blue mussels were stimulated with lipopolysaccharides and samples were collected at different time points post injection. Protein extracts were prepared from the gills, digested using trypsin and a full in-depth proteome investigation was performed using LC-Orbitrap MS/MS technique. The spectra (.RAW) were acquired using Xcalibur software 3.0.63 and further database searches were performed using MaxQuant 1.5.1.2. The search results were stored as.xls-files.
Data source location	Uppsala, Sweden
Data accessibility	Data are within this article (Supplementary Table 1)