Table 1.
Chilo suppressalis | Heliothis virescens | Plutella xylostella | Pectinophora gossypiella | |
---|---|---|---|---|
Platform | Illumina | Illumina, Roche, 454, Sanger | Illumina | Illumina |
Assembled reads | 39,400,002 | 212,987,028 | 39,764,230 | 18,623,508 |
Average read size (bp) | 90 | Variable | 90 | 72 |
Number of contigs | 37,040 | 63,648 | 213,674 | 46,458 |
Contigs per 1000 reads | 0.94 | 0.30 | 5.4 | 2.5 |
Mean contig size (bp), range | 497, 201–9744 | 383, 80–2000 | 189, nr | 770, 224–14,619 |
Sequences with e-value <10−5 | 15,446 | 29,978 | 28,768 | 21,715 |
Number of e-value <10−5 hits Per 1000 reads | 0.39 | 0.14 | 0.72 | 1.2 |
GC (%) | 42 | nra | nr | 39 |
N50 transcript length (bp) | nr | 1031 | 262 | 1153 |
Pipeline | Trinity | SeqMan Ngen v2.1 | Trinity | Trinity |
Reference | [14] | [15] | [13] | This study |
a nr not reported