Skip to main content
. Author manuscript; available in PMC: 2016 Sep 10.
Published in final edited form as: J Phys Chem B. 2015 Aug 31;119(36):12074–12085. doi: 10.1021/acs.jpcb.5b07909

Figure 3.

Figure 3

Changes of the center of mass (COM) distance (Z) between the low pH T-domain models and lipid bilayers along the bilayer normal axis. (A) COM distances obtained from orientation B1 (black line) and orientation B2 (cyan). Simulations were performed at T = 310 K. (B) COM distances obtained from orientation B1 (red) and acidic side-chains neutralized (blue lines). Simulations were performed at T = 323 K. All histidines are set in their protonated state in all simulations, and other acidic residues are set in their standard state, unless indicated.