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. Author manuscript; available in PMC: 2017 Mar 1.
Published in final edited form as: IEEE/ACM Trans Comput Biol Bioinform. 2016 Mar-Apr;13(2):350–364. doi: 10.1109/TCBB.2015.2452916

TABLE 2.

Biological Processes and Properties, and their Corresponding Interpretations in the Dynamic Graph-Based Growth Model, and the State-of-art Monte-Carlo-Based-Simulation Model Used for Comparison.

Biology Dynamic Graph Model GGH Model
Gland Structure Graph Geometry Effective Energy
Mitosis Rate New Vertex Creation Rate Mitosis
Cell-cell Adhesion Maximum Link Length Contact Energy
Cell Volume Cell Diameter, or Minimum Link Length Cell Area
Cell Surface Area Not Included Cell Perimeter
Cleft Deepening Edge Deletion Manual Specification