Table 2.
Detailed information regarding the newly identified Pib alleles and the accessions carrying the respective alleles.
| Pib alleles | % identity to reference | Unique SNPs/InDels | Origin of accessions carrying the allele | Number of accessions carrying the allele | ||
|---|---|---|---|---|---|---|
| Indica | Japonica | Javanica | ||||
| Pib_24475 | 98 | ∗ | Thailand | 1 | - | - |
| Pib_41515 | 98 | ∗ | India | 3 | - | - |
| Pib_41341 | 98 | India | 1 | - | - | |
| Pib_32909 | 98 | ∗ | Bangladesh | 2 | - | - |
| Pib_11147 | 99 | ∗ | Myanmar | 2 | - | - |
| Pib_16784 | 99 | ∗ | Vietnam | 1 | - | 1 |
| Pib_26038 | 97 | ∗ | Brazil | - | 1 | - |
| Pib_29336 | 98 | Bangladesh, India | 12 | - | - | |
| Pib_4633 | 97 | ∗ | China, Philippines | 2 | - | - |
| Pib_5151 | 98 | ∗ | China, India | 3 | - | - |
| Pib_40286 | 99 | China, Thailand, Vietnam, Indonesia, Philippines | 29 | 1 | - | |
| Pib_14981 | 98 | ∗ | Thailand | - | 3 | 1 |
| Pib_23713 | 98 | Thailand | - | - | 1 | |
| Pib_23712 | 98 | ∗ | Thailand | - | - | 1 |
| Pib_10101 | 98 | ∗ | India | 2 | - | - |
| Pib_29436 | 98 | Bangladesh | 1 | - | - | |
| Pib_13373 | 98 | Bangladesh, Nepal | 2 | - | - | |
| Pib_23721 | 98 | India, Thailand | 12 | 5 | 18 | |
| Pib_9829 | 98 | Bangladesh, India, Nepal | 13 | - | - | |
| Pib_23761 | 98 | ∗ | India, Myanmar, Thailand | 4 | - | 2 |
| Pib_4868 | 93 | China | 1 | - | - | |
| Pib_40432 | 93 | Philippines | 2 | - | - | |
| Pib_2476 | 93 | ∗ | Myanmar, China, Taiwan, Japan | 9 | - | - |
| Pib_16706 | 93 | Brazil, China, India, Nepal, Taiwan, Vietnam | 13 | 2 | - | |
| Pib_5284 | 96 | India, Philippines | 9 | - | - | |
Asterisk indicates alleles with unique SNPs and/or InDels. Alleles indicated in bold possess a complete ORF as that of reference allele.