Table 1.
Pairwise dN/dS analyses on several lineages with truncated SIRH11/ZCCHC16.
| dN/dS | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| A | |||||||||||||||
| 1. Human | |||||||||||||||
| 2. Chimpanzee | 0.309 | ||||||||||||||
| 3. pygmy_chimpanzee | 0.196 | 0.303 | |||||||||||||
| 4. Western_lowland_gorilla | 0.202 | 0.424 | 0.3 | ||||||||||||
| 5. Sumatran_orangutan | 0.453 | 0.713 | 0.512 | 0.705 | |||||||||||
| 6. Northern_white-cheeked_gibbon_a | 0.703 | 0.741 | 0.613 | 0.902 | 0.836 | ||||||||||
| B | |||||||||||||||
| 1. Black_flying_fox | |||||||||||||||
| 2. Large_flying_fox | 1.545 | ||||||||||||||
| 3. Big_brown_bat | 0.715 | 0.686 | |||||||||||||
| 4. Little_brown_bat | 0.66 | 0.625 | 0.615 | ||||||||||||
| 5. Brandts_bat | 0.682 | 0.646 | 0.529 | 0.625 | |||||||||||
| 6. Myotis_davidii | 0.718 | 0.679 | 0.609 | 0.597 | 0.53 | ||||||||||
| C | |||||||||||||||
| 1. Azaras_owl_monkey | |||||||||||||||
| 2. Mas_night_monkey | 0.090 | ||||||||||||||
| 3. Common_marmoset | 0.749 | 0.657 | |||||||||||||
| 4. Tufted_capuchin | 1.914 | 1.395 | 0.988 | ||||||||||||
| 5. Bolivian_squirrel_monkey | 0.985 | 1.058 | 0.795 | 1.035 | |||||||||||
| D | |||||||||||||||
| 1. Damara_mole-rat | |||||||||||||||
| 2. Naked_mole-rat | 0.813 | ||||||||||||||
| 3. Domestic_guinea_pig | 0.687 | 0.505 | |||||||||||||
| 4. Long-tailed_chinchilla | 0.861 | 0.711 | 0.599 | ||||||||||||
| 5. Degu | 0.634 | 0.575 | 0.408 | 0.639 | |||||||||||
| 6. Lesser_Egyptian_jerboa | 0.435 | 0.378 | 0.353 | 0.407 | 0.514 | ||||||||||
| 7. Ords_kangaroo_rat | 0.557 | 0.594 | 0.43 | 0.556 | 0.527 | 0.454 | |||||||||
| 8. Prairie_vole | 0.485 | 0.492 | 0.549 | 0.63 | 0.53 | 0.439 | 0.582 | ||||||||
| 9. Chinese_hamster | 0.514 | 0.556 | 0.509 | 0.54 | 0.602 | 0.385 | 0.462 | 0.546 | |||||||
| 10. Golden_hamster | 0.579 | 0.533 | 0.491 | 0.583 | 0.558 | 0.467 | 0.524 | 0.587 | 0.52 | ||||||
| 11. Prairie_deer_mouse | 0.549 | 0.527 | 0.505 | 0.616 | 0.525 | 0.454 | 0.55 | 0.708 | 0.556 | 0.635 | |||||
| 12. House_mouse | 0.516 | 0.437 | 0.432 | 0.484 | 0.462 | 0.359 | 0.48 | 0.435 | 0.375 | 0.332 | 0.443 | ||||
| 13. Norway_rat | 0.453 | 0.442 | 0.362 | 0.414 | 0.451 | 0.372 | 0.557 | 0.472 | 0.488 | 0.34 | 0.519 | 0.442 | |||
| 14. Upper_Galilee_mountains_blind_mole_rat | 0.421 | 0.43 | 0.393 | 0.531 | 0.585 | 0.437 | 0.449 | 0.643 | 0.603 | 0.658 | 0.642 | 0.496 | 0.613 | ||
| 15. Thirteen-lined_ground_squirrel | 0.525 | 0.517 | 0.605 | 0.535 | 0.442 | 0.316 | 0.437 | 0.424 | 0.383 | 0.473 | 0.428 | 0.369 | 0.339 | 0.361 | |
| E | |||||||||||||||
| 1. Chiru | |||||||||||||||
| 2. Bison_bison_bison | 0.881 | ||||||||||||||
| 3. Cattle | 1.254 | 0.19 | |||||||||||||
| 4. Wild_yak | 1.313 | 0.323 | nd | ||||||||||||
| 5. Water_buffalo | 1.639 | 0.601 | 0.9 | 0.976 | |||||||||||
| 6. Goat | 1.13 | 0.655 | 0.864 | 0.913 | 1.077 | ||||||||||
| 7. Sheep | 0.627 | 0.613 | 0.751 | 0.787 | 0.652 | 0.259 | |||||||||
| 8. Mouflon | 0.676 | 0.644 | 0.789 | 0.825 | 0.688 | 0.331 | nd | ||||||||
| F | |||||||||||||||
| 1. Balaenoptera_acutorostrata_scammoni | |||||||||||||||
| 2. killer_whale | 1.415 | ||||||||||||||
| 3. bottlenosed_dolphin | 0.949 | 0 | |||||||||||||
| 4. Yangtze_River_dolphin | 0.844 | 0.4 | 0.331 | ||||||||||||
| 5. Sperm_whale | 0.574 | 0.722 | 0.575 | 0.466 | |||||||||||
(A) Pairwise dN/dS analysis on Homonidae, (B) Pairwise dN/dS analysis on Chiropreta, (C) Pairwise dN/dS analysis on Platyrrhini, (D) Pairwise dN/dS analysis on Rodentia, Hystricognathi species are shown yellow. (E) Pairwise dN/dS analysis on Ruminantia, (F) Pairwise dN/dS analysis on Cetacea. The dN/dS values more than 0.80 or less than 0.21 are shown in red or blue, respectively. When the dS value is 0, it is impossible to calculate this value, therefore, indicated as nd.