Table 2.

Exclusively enriched GO terms using identified DE genes in the embryonic stem cells study

	GO code1	GO term description	P-value2
multiDE	GO:0030163 [BP]	Protein catabolic process	1.72e-04
	GO:0044257 [BP]	Cellular protein catabolic	5.60e-04
		process
	GO:0005829 [CC]	Cytosol	4.00e-03
	GO:0030530 [CC]	Nuclear ribonucleoprotein	6.16e-03
		complex
	GO:0019787 [MF]	Small conjugating protein	2.71e-02
		ligase activity
	GO:0031967 [CC]	Organelle envelope	4.32e-02
edgeR	GO:0010468 [BP]	Regulation of gene expression	1.29e-03
	GO:0022618 [BP]	Ribonucleoprotein complex	1.27e-02
		assembly
	GO:0044452 [CC]	Nucleolar part	1.61e-02
	GO:0006413 [BP]	Translational initiation	4.86e-02
DESeq2	GO:0000279 [BP]	M phase	1.31e-04
	GO:0005819 [CC]	spindle	3.70e-04
	GO:0030880 [CC]	RNA polymerase complex	2.07e-03
	GO:0006259 [BP]	DNA metabolic process	2.83e-03

¹[BP], biological process ontology; [CC], cellular component ontology; [MF], molecular function ontology.

²Bonferroni adjusted p-value