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. Author manuscript; available in PMC: 2016 Jun 23.
Published in final edited form as: Cell Rep. 2014 Feb 20;6(5):906–915. doi: 10.1016/j.celrep.2014.01.037

Table 3.

Genes with RDDs in their nascent RNAs are enriched for roles in regulation and metabolism of macromolecules.

GO Term Examples P-value
gene expression RNF10, ZNF791, KDM2B; DHX9; ELF4 1.8 × 10−60
nucleic acid metabolic process SP3, MAX, RPS6KA4; PSMD11; UTP23 6.2 × 10−60
RNA metabolic process RPS24; ELF1; CPEB2; DHX9; NFX1 2.6 × 10−58
cellular macromolecule biosynthetic process DPF1; SEC14L2; RPL18A; UPF1; HARS 4.5 × 10−53
macromolecule biosynthetic process ARFRP1;CTBP2; TSG101; GTF3C2; PARP10 4.3 × 10−51
regulation of macromolecule metabolic process AXIN1; FYN; VCP; SMARCA5; ZNF7 3.9 × 10−50
regulation of cellular metabolic process BCOR; ELL; MTF1; STAT5A; VPS36 2.4 × 10−49
cellular protein metabolic process CCT8; TCF3; RNF115; UBE4B; LNX1 4.9 × 10−49
regulation of primary metabolic process ATG7; CLIP3; YLPM1; CD44; POGK 8.6 × 10−47
regulation of nitrogen compound metabolic process AGRN; SMARCC1; MOV10; SUMO1; HSPA8 4.6 × 10−36