Table 2.
Potential IGC proteins
| Protein Description | Accession Code | RNA Binding Motif | RS | Other Domains and Motif(s)a | Low Complexity Region |
|---|---|---|---|---|---|
| A-kinase anchor protein 8K | Q63014 | 1 ZnF_C2H2 | Yes | ||
| Aladin (Adracalin). | P58742 | 4 WD 40 repeats | Yes | ||
| Aquarius (KIAA0560) | AAB50008 | Yes | |||
| Ash2 | AAC13564 | SPRY | Yes | ||
| Ataxin-1 | P54254 | AXH | Yes | ||
| BAF53A | AAC94992 | Actin | |||
| BAF57 | AAC04509 | HMG, coiled coil | Yes | ||
| BMAL1(HLH/PAS protein) | O00327 | Yes | |||
| C/EBPa | P53566 | BRLZ | Yes | ||
| C/EBPb | P28033 | BRLZ | Yes | ||
| Calsyntenin 1 (KIAA0911) | NP_075538 | Signal peptide, cadherin repeats, transmembrane, coiled coil | Yes | ||
| CyP-60 (cyclophilin-like protein) | S64705 | Ubox, pro_isomerase | Yes | ||
| Dna J protein homolog 2 | P31689 | Dna J, DnaJ CXXCXGXG, DnaJ C | Yes | ||
| dpy-30-like protein | NP_115963 | Dpy-30 | |||
| Early lymphoid activation protein | I56219 | ||||
| eIF4AI | P04765 | DEXDc, HELICc | |||
| FB19 protein | JE0291 | TFS2N, 1 ZnF_C3H1 | Yes | ||
| G10 protein | AAC14190 | ||||
| GC-rich sequence DNA-binding factor candidate | AAD34617 | Yes | |||
| General transcription factor IIIC, polypeptide 2 | NP_001512 | 4 WD 40 repeats | Yes | ||
| Hepatocyte nuclear factor 1 alpha | P15257 | HOX | Yes | ||
| Hepatocyte nuclear factor 4 alpha | P41235 | 1 ZnF_C4, HOLI | Yes | ||
| Homeobox protein zhx-1 | JC4863 | 2 ZnF_C2H2, 5 HOX | Yes | ||
| Interleukin enhancer binding factor 2 | NP_080650 | DZF | Yes | ||
| IRA1 | AAG44738 | LisH, 8 WD 40 repeats | Yes | ||
| LIM-domain protein LMP-1 | AAD13197 | PDZ, 3 LIM | Yes | ||
| Lupus La protein | P32067 | RRM | LA | Yes | |
| Mader/NAB | S31927 | Yes | |||
| MAX-like bHLHZIP protein, transcription factor-like 4 | NP_037515 | HLH | |||
| mRNA associated protein MRNP 41 (RAE1 homolog) | P78406 | 4 WD 40 repeats | Yes | ||
| mRNA export factor TAP | Q99JX7 | RRM | LRR, LRRcap, NTF2, TAPC | Yes | |
| Ngfi-A binding protein 1 | NP_032693 | NCD1, NCD2, Nab1 | Yes | ||
| Nuclear Factor I-X | P09414 | DWA | Yes | ||
| Nuclear protein ZAP3 | Q9R0I7 | Coiled coil | Yes | ||
| Nuclear receptor coactivator 5 | NP_066018 | HGTP anticodon, coiled coil | Yes | ||
| Nuclear VCP-like protein NVLp.1 | AAB70460 | AAA | Yes | ||
| NuMA | A42184 | Coiled coil | Yes | ||
| p150TSP (KIAA0155) | BAA09925 | 9 TPR, coiled coil | Yes | ||
| PCAF-associated factor 400, PAF400 | AAD04629 | FAT, PI3Kc, FATc | Yes | ||
| Peptidylprolyl isomerase (cyclophilin)-like 1 | NP_057143 | ||||
| Polymyositis/Scleroderma autoantigen 1, PM/SCL-75 | Q9JH17 | RNase_PH, RNase_PH_C | Yes | ||
| Predicted osteoblast protein | BAA13251 | Signal peptide | |||
| Prox1 | Q92786 | ||||
| RAD50 | AAC52894 | Rad50_zn_hook, coiled coil | Yes | ||
| RuvB like DNA helicase | NP_035434 | AAA | |||
| SEC13-related protein | NP_109598 | 6 WD 40 repeats | |||
| Symplekin, Huntingtin interacting protein I | XP_017129 | Yes | |||
| SYT interacting protein SIP | AAC64058 | 2 RRMs | Yes | ||
| TAFII30 protein | CAB59510 | Signal peptide | Yes | ||
| TAR DNA binding protein | NP_663531 | 2 RRMs | Yes | ||
| TAR DNA-binding protein-43 | I38977 | 2 RRMs | Yes | ||
| Thyroid hormone receptor-associated protein 100 kDa·· (KIAA0130) | NP_035999 | Yes | |||
| Thyroid hormone receptor-associated protein 150 kDa | AAD22034 | Yes | Yes | ||
| Transcription elongation factor B (SIII) polypeptide 2, elongin B | NP_112391 | UBQ | |||
| Transcription factor NF-AT 45 | A54857 | DZF | |||
| Transcription factor-like protein 4 | JC5333 | HLH | Yes | ||
| Transcription intermediary factor 1-beta, TIF1-beta | Q62318 | Signal peptide, 2 RING, 2 BBOX, BBC, PHD, BROMO | Yes | ||
| Transcriptional co-activator CRSP77 | XP_048386 | ||||
| Transcriptional intermediary factor 2 | CAA66263 | HLH, PAS, PAC | Yes | ||
| Transducin (beta) like 1 protein | CAA73319 | Yes | |||
| Trf-proximal protein | NP_064432 | ||||
| Tuftelin-interacting protein 33 | NP_061253 | G_patch | Yes | ||
| Tumor protein D52 | P55327 | TPD52 | |||
| WD repeat domain 5 protein | NP_060058 | 7 WD40 repeats | Yes | ||
| WD repeat protein BIG-3 | AAL27006 | 7 WD40 repeats | Yes | ||
| XPA-binding protein 2, XAB2 (KIAA1177) | BAB15807 | 11 HAT | Yes | ||
| XPE UV-damaged DNA binding protein | CAA05770 | Yes | |||
| ZAN75 | BAA31522 | 2 ZnF_C2H2 | Yes | ||
| Zinc finger DNA binding protein 99 ZBP-99 | AAD21084 | 4 ZnF_C2H2 | Yes | ||
| Zinc finger protein | CAB70967 | 4 ZnF_C2H2 | Yes |
a
Database for motif and domain searches: SMART (http://smart.embl-heidelberg.de), (Schultz et al., 1998; Letunic et al., 2002). Only those proteins containing SR dipeptides were manually searched for RD/E dipeptide repeats and for other repetitive amino acid sequences