Table 2. Summary of single-nucleotide polymorphisms (SNPs).
| Genome name | Total SNPs | SNPs per Mbp | Synonymous SNPs |
Nonsynonymous SNPs |
Intergenic | |
|---|---|---|---|---|---|---|
| Missense | Nonsense | |||||
| Actinobacterium-149 | 3514 | 4599 | 2914 | 460 | 3 | 136 |
| Nitrosomonadales-439 | 1772 | 1753 | 1378 | 275 | 3 | 91 |
| Polynucleobacter-567 | 4571 | 2753 | 3627 | 710 | 3 | 231 |
| Rickettsia-755 | 45 | 44 | 18 | 11 | 2 | 14 |
| Betaproteobacteria-788 | 6244 | 6188 | 5039 | 851 | 3 | 231 |
| Methylophilaceae-913 | 3003 | 3186 | 2223 | 656 | 1 | 123 |
| Opitutae-1301 | 6437 | 3161 | 5257 | 893 | 4 | 283 |
| Opitutae-1800 | 3839 | 1743 | 2924 | 663 | 1 | 223 |
| Actinobacterium-2057 | 2238 | 2182 | 1659 | 377 | 0 | 84 |
| Chlorobium-111 | 3111 | 1344 | 1498 | 1127 | 22 | 464 |
| Polynucleobacter-238 | 6451 | 4908 | 3418 | 738 | 1 | 2291 |
| Holophagales-254 | 8501 | 2851 | 5605 | 2004 | 10 | 881 |
| Desulfocapsa-433 | 4995 | 1625 | 3187 | 1037 | 1 | 770 |
| Methylotenera-545 | 279 | 195 | 132 | 120 | 1 | 26 |
| Actinobacterium-680 | 297 | 236 | 189 | 47 | 1 | 60 |
| Polynucleobacter-941 | 4269 | 2853 | 2971 | 971 | 4 | 323 |
| TM7-1225 | 3 | 3 | 0 | 1 | 0 | 2 |
| Methylobacter-1380 | 1381 | 600 | 951 | 197 | 1 | 232 |
| Methylotenera-1381 | 1779 | 1651 | 1153 | 434 | 2 | 190 |
| Sulfurimonas-1998 | 279 | 121 | 154 | 95 | 1 | 29 |
| Methylobacter-2062 | 6660 | 2131 | 3908 | 1515 | 14 | 1223 |
| Bacteroidales-2086 | 4256 | 1157 | 2389 | 1231 | 12 | 623 |
| Actinobacterium-2152 | 4209 | 4979 | 3400 | 597 | 3 | 209 |
| Opitutae-2519 | 8036 | 4442 | 6254 | 1246 | 4 | 531 |
| Methylophilaceae-2902 | 2943 | 2934 | 2115 | 712 | 2 | 113 |
| Desulfobulbus-2922 | 145 | 38 | 43 | 70 | 3 | 29 |
| Actinobacterium-3180 | 2111 | 1836 | 1551 | 318 | 2 | 240 |
| Gallionella-3415 | 69 | 26 | 35 | 23 | 0 | 11 |
| Chlorobium-3520 | 4146 | 1922 | 2317 | 1180 | 11 | 637 |
| Acidomicrobium-3765 | 2126 | 1616 | 1505 | 477 | 0 | 143 |