Table 2. Summary statistics of different properties of assembling into reference sequences.
Feature | Value |
---|---|
(i) RAD-PE assembly statistics | |
Total contig base (bp) | 113,529,353 |
The number of contigs retained | 285,408 |
Average contig length (bp) | 397 |
N50 contig length (bp) | 509 |
GC content (%) | 40.11 |
(ii) Match statistics | |
Mapping rate (%) | 90.54 |
Average depth | 31.56 |
Coverage (> 4×) (%) | 87.22 |
SNP number | 217,531 |