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Iterative inference of DREAM4 100-gene gold-standard GRNs with multiplexing assay using TRaCE and using TRaCE+ (w cut = 0 and w cut = 0.3): Number of iterations and maximum number of genes in KO experiments
| Net | TRaCE | TRaCE+ | TRaCE+(w) | |||
|---|---|---|---|---|---|---|
| Iterations | Max KO | Iterations | Max KO | Iterations | Max KO | |
| 1 | 7 | 3 | 5 | 3 | 6 | 4 |
| 2 | 5 | 2 | 4 | 2 | 4 | 2 |
| 3 | 10 | 3 | 11 | 3 | 12 | 3 |
| 4 | 14 | 3 | 15 | 3 | 14 | 3 |
| 5 | 11 | 3 | 12 | 4 | 13 | 4 |
