Table 1. List of Taxon Included in This Study.
| Order | Family | Species | Length (bp) | Accession No. | Reference |
|---|---|---|---|---|---|
| Diptera | Culicidae | Anopheles quadrimaculatus Say | 15455 | NC_000875 | Mitchell et al. (1993) [8] |
| Anopheles gambiae Giles | 15363 | NC_002084 | Beard et al. (1993) [9] | ||
| Anopheles darling Root* | 15386 | NC_014275 | Moreno et al. (2010) [10] | ||
| Anopheles culicifacies Giles | 15330 | NC_027502 | Hua, YQ. et al. (2015) [11] | ||
| Anopheles cruzii Dyar & Knab | 15449 | NC_024740 | Marinotti, O. et al. | ||
| Anopheles deaneorum Rosa-Freitas | 15424 | NC_020663 | Krzywinski et al. (2011) [12] | ||
| Anopheles albitarsis Lynch-Arribálzaga* | 15413 | NC_020662 | Krzywinski et al. (2011) [12] | ||
| Anopheles oryzalimnetes Wilkerson & Motoki | 15422 | HQ335345 | Krzywinski et al. (2011) [12] | ||
| Anopheles janconnae Wilkerson & Sallum | 15425 | HQ335348 | Krzywinski et al. (2011) [12] | ||
| Anopheles farauti Laveran | 15412 | NC_020770 | Logue et al. (2013) [13] | ||
| Anopheles hinesorum Schmidt | 15336 | NC_020769 | Logue et al. (2013) [13] | ||
| Anopheles cracens Sallum & Peyton | 15412 | NC_020768 | Logue et al. (2013) [13] | ||
| Anopheles dirus Peyton & Harrison | 15404 | JX219731 | Logue et al. (2013) [13] | ||
| Anopheles punctulatus Donitz | >15412 | JX219744 | Logue et al. (2013) [13] | ||
| Anopheles koliensis Owen | >15412 | JX219743 | Logue et al. (2013) [13] | ||
| Aedes albopictus (Skuse) | 16665 | NC_006817 | Ho et al. unpublished | ||
| Aedes aegypti (Linnaeus) | 16655 | NC_010241 | Behura et al. (2011) [14] | ||
| Aedes notoscriptus (Skuse) | 15846 | NC_025473 | Hardy, C.M. et al. (2014) [15] | ||
| Aedes vigilax (Skuse) | 15877 | KP995260 | Hardy, C.M. et al. (2015) [16] | ||
| Culex quinquefasciatus Say* | 15587 | NC_014574 | Behura et al. (2011) [14] | ||
| Culex pipiens Linnaeus | 14856 | NC_015079 | Atyame et al. (2011) [17] | ||
| Ochlerotatus vigilax (Skuse) | 15877 | NC_027494 | Hardy, C.M. et al. (2015) [15] | ||
| Ceratopogonidae | Culicoides arakawae (Arakawa)* | 18135 | NC_009809 | Matsumoto et al. (2009) [18] | |
| Sciaridae | Bradysia amoena (Winnertz)* | >14049 | GQ387651 | Beckenbach & Joy (2009) [6] | |
| Cecidomyiidae | Mayetiola destructor (Say)* | 14759 | NC_013066 | Beckenbach & Joy (2009) [6] | |
| Rhopalomyia pomum Gagne* | 14503 | NC_013063 | Beckenbach & Joy (2009) [6] | ||
| Trichoceridae | Trichocera bimacula Walker* | 16140 | NC_016169 | Beckenbach (2012) [7] | |
| Paracladura trichoptera (Osten Sacken)* | 16143 | NC_016173 | Beckenbach (2012) [7] | ||
| Anisopodidae | Sylvicola fenestralis (Scopoli)* | 16234 | NC_016176 | Beckenbach (2012) [7] | |
| Tipulidae | Tipula abdominalis (Say)* | >14566 | JN_861743 | Beckenbach (2012) [7] | |
| Ptychopteridae | Ptychoptera sp.* | 15214 | NC_016201 | Beckenbach (2012) [7] | |
| Bittacomorphella fenderiana Alexander* | >15609 | JN_861745 | Beckenbach (2012) [7] | ||
| Tanyderidae | Protoplasa fitchii Osten Sacken* | 16154 | NC_016202 | Beckenbach (2012) [7] | |
| Pachyneuridae | Cramptonomyia spenceri Alexander* | 16274 | NC_016203 | Beckenbach (2012) [7] | |
| Keroplatidae | Arachnocampa flava Harrison* | 16923 | NC_016204 | Beckenbach (2012) [7] | |
| Chironomidae | Chironomus tepperi Skuse* | 15652 | NC_016167 | Beckenbach (2012) [7] | |
| Parochlus steinenii Gercke | 16803 | KT003702 | Shin, SC. & Kim, SH. | ||
| Dixidae | Dixella sp.* | 15574 | KM245574 | Kang et al. (2014) [19] | |
| Psychodidae | Nyssomyia umbratilis (Ward & Fraiha)* | 15757 | NC_026898 | Kocher, A et al. (2015) [20] | |
| Limoniidae | Symplecta hybrida (Meigen)* | 15811 | KT970064 | Present study | |
| Rhipidia chenwenyoungi Zhang, Li & Yang * | >14647 | KT970063 | Present study | ||
| Paradelphomyia sp.* | >14636 | KT970061 | Present study | ||
| Cylindrotomidae | Cylindrotoma sp.* | >15372 | KT970060 | Present study | |
| Pediciidae | Pedicia sp.* | >14829 | KT970062 | Present study | |
| Tipulidae | Tipula cockerelliana Alexander* | >14541 | KT970065 | Present study | |
| Brachycera (suborder) | Tabanidae | Cydistomyia duplonotata (Ricardo)* | 16247 | NC_008756 | Cameron, et al. 2007 [21] |
| Nemestrinidae | Trichophthalma punctata (Macquart)* | 16396 | NC_008755 | Cameron, et al. 2007 [21] | |
| Syrphidae | Simosyrphus grandicornis (Macquart)* | 16141 | NC_008754 | Cameron, et al. 2007 [21] | |
| Muscidae | Haematobia irritans (Linnaeus)* | 16078 | NC_007102 | Lessinger, et al. unpublished | |
| Mecoptera | Boreidae | Boreus elegans Carpenter* | 16803 | NC_015119 | Beckenbach 2011[22] |
| Bittacidae | Bittacus pilicornis Westwood* | 15842 | NC_015118 | Beckenbach 2011[22] | |
| Siphonaptera | Ceratophyllidae | Jellisonia amadoi Ponce-Ulloa* | 17031 | NC_022710.1 | Cameron, 2013 [23] |
* Species used for phylogenetic analysis in this study.