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. 2016 Jun 24;11(6):e0158167. doi: 10.1371/journal.pone.0158167

Table 2. mitochondrial nucleotide composition in six tipuloid flies.

Region Cylindrotoma Paradelphomyia Pedicia Rhipidia Symplecta Tipula
PCGs(J) A+T% 72.7 75 70.2 74.9 74 70.6
G+C% 27.2 25.1 29.9 25.1 26 29.4
AT-skew -0.09 -0.11 -0.06 -0.13 -0.13 -0.11
GC-skew -0.14 -0.08 -0.15 -0.08 -0.06 -0.18
1stcondon position(J) A+T% 66.9 68.1 62 67.9 64.8 63.6
G+C% 33.5 31.6 38 32.2 35.2 36.7
AT-skew -0.02 0.03 0.03 -0.03 -0.11 -0.01
GC-skew 0.18 0.17 0.11 0.2 0.16 0.09
2ndcondon position(J) A+T% 64.3 66.3 64.3 65.9 67.8 64.5
G+C% 35.4 33.6 35.5 34.4 32.2 35.1
AT-skew -0.37 -0.36 -0.37 -0.37 -0.3 -0.36
GC-skew -0.27 -0.24 -0.24 -0.25 -0.25 -0.26
3rdcondon position(J) A+T% 87.5 90.2 83.8 91.8 89.7 83.7
G+C% 12.5 9.8 16.1 8.7 10.3 16.7
AT-skew 0.04 -0.04 0.12 -0.05 -0.03 0
GC-skew -0.6 -0.3 -0.55 -0.49 -0.2 -0.59
PCGs(N) A+T% 77.5 78.3 74.2 78.7 78.1 74.5
G+C% 22.5 21.7 25.8 21.2 21.9 25.5
AT-skew -0.24 -0.22 -0.32 -0.17 -0.2 -0.22
GC-skew 0.26 0.28 0.33 0.25 0.25 0.34
1stcondon position(N) A+T% 74 74.1 70.6 74.3 72.8 77.5
G+C% 26.1 25.8 29.7 25.4 27.2 22.8
AT-skew -0.19 -0.16 -0.19 -0.1 -0.15 -0.16
GC-skew 0.47 0.43 0.45 0.45 0.47 0.48
2ndcondon position(N) A+T% 68.7 69.4 68 69.3 68.3 69.2
G+C% 31.6 30.4 32.4 31 31.7 31.2
AT-skew -0.43 -0.44 -0.44 -0.41 -0.43 -0.3
GC-skew 0 0.05 0.01 0.01 -0.01 0.26
3rdcondon position(N) A+T% 90.3 91.6 85.1 92.8 93.4 77.1
G+C% 9.7 8.9 15.2 7.4 6.6 22.6
AT-skew -0.15 -0.09 -0.34 -0.03 -0.07 -0.22
GC-skew 0.59 0.62 0.76 0.54 0.59 0.3
tRNA genes A+T% 78.1 80.9 75 80.3 75.9 75.8
G+C% 21.9 19.1 25 19.7 24.1 24.1
AT-skew 0 0.02 0 -0.01 0 0.02
GC-skew 0.12 0.14 0.09 0.16 0.13 0.09
lrRNA A+T% 82 83 80.1 82.5 81.5 80.1
G+C% 18 17 19.9 17.5 18.5 19.9
AT-skew -0.04 -0.1 -0.09 -0.01 -0.05 -0.03
GC-skew 0.29 0.31 0.3 0.28 0.29 0.36
srRNA A+T% 79.3 78.9 74.6 78.7 79.2 75.7
G+C% 20.7 21.1 25.5 21.3 20.8 24.3
AT-skew -0.03 -0.03 0 -0.01 -0.01 0.02
GC-skew 0.26 0.27 0.26 0.23 0.25 0.25
Whole mitgenome A+T% 76.7 77.5 73.1 77.5 77.1 73.3
G+C% 23.3 22.4 26.9 22.4 22.9 26.6
AT-skew 0.03 0.02 0.08 0 0.01 0.02
GC-skew -0.18 -0.16 -0.21 -0.16 -0.14 -0.23

Note: The AT-bias and GC-bias of PCGs were calculated by the formulae: AT-skew = (A-T)/(A+T), GC-skew = (G-C)/(C+G).